Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DOU34_RS10800 Genome accession   NZ_CP030097
Coordinates   2241067..2241402 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2236067..2246402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS10780 gcvT 2236673..2237773 (-) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -
  DOU34_RS10785 - 2238197..2239867 (+) 1671 WP_007408331.1 SNF2-related protein -
  DOU34_RS10790 - 2239889..2240683 (+) 795 WP_007408330.1 YqhG family protein -
  DOU34_RS10795 sinI 2240860..2241033 (+) 174 WP_061046621.1 anti-repressor SinI family protein Regulator
  DOU34_RS10800 sinR 2241067..2241402 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DOU34_RS10805 - 2241450..2242235 (-) 786 WP_007408329.1 TasA family protein -
  DOU34_RS10810 - 2242300..2242884 (-) 585 WP_007408328.1 signal peptidase I -
  DOU34_RS10815 tapA 2242856..2243527 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  DOU34_RS10820 - 2243786..2244115 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  DOU34_RS10825 - 2244155..2244334 (-) 180 WP_003153093.1 YqzE family protein -
  DOU34_RS10830 comGG 2244391..2244768 (-) 378 WP_032866434.1 competence type IV pilus minor pilin ComGG Machinery gene
  DOU34_RS10835 comGF 2244769..2245269 (-) 501 WP_257645080.1 competence type IV pilus minor pilin ComGF -
  DOU34_RS10840 comGE 2245178..2245492 (-) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  DOU34_RS10845 comGD 2245476..2245913 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  DOU34_RS10850 comGC 2245903..2246169 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=299119 DOU34_RS10800 WP_003153104.1 2241067..2241402(+) (sinR) [Bacillus amyloliquefaciens strain SH-B74]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=299119 DOU34_RS10800 WP_003153104.1 2241067..2241402(+) (sinR) [Bacillus amyloliquefaciens strain SH-B74]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment