Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ES967_RS17860 Genome accession   NZ_CP035394
Coordinates   3433479..3436352 (-) Length   957 a.a.
NCBI ID   WP_003228057.1    Uniprot ID   A0ABU0VAU0
Organism   Bacillus subtilis strain SRCM103696     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3428479..3441352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES967_RS17825 (ES967_17825) pchE 3428938..3430149 (+) 1212 WP_003228068.1 MFS transporter -
  ES967_RS17830 (ES967_17830) yvlD 3430177..3430536 (-) 360 WP_003228066.1 phage holin family protein -
  ES967_RS17835 (ES967_17835) yvlC 3430538..3430735 (-) 198 WP_003228065.1 PspC domain-containing protein -
  ES967_RS17840 (ES967_17840) yvlB 3430740..3431837 (-) 1098 WP_003228061.1 DUF4097 family beta strand repeat-containing protein -
  ES967_RS17845 (ES967_17845) yvlA 3431862..3432188 (-) 327 WP_003244375.1 protein YvlA -
  ES967_RS17850 (ES967_17850) - 3432406..3432636 (+) 231 WP_003228059.1 hypothetical protein -
  ES967_RS17855 (ES967_17855) - 3432835..3433398 (-) 564 Protein_3429 flagellin -
  ES967_RS17860 (ES967_17860) uvrA 3433479..3436352 (-) 2874 WP_003228057.1 excinuclease ABC subunit UvrA Machinery gene
  ES967_RS17865 (ES967_17865) uvrB 3436360..3438345 (-) 1986 WP_003243787.1 excinuclease ABC subunit UvrB Machinery gene
  ES967_RS17870 (ES967_17870) csbA 3438531..3438761 (-) 231 WP_003228053.1 CsbA family protein -

Sequence

Protein


Download         Length: 957 a.a.        Molecular weight: 106032.21 Da        Isoelectric Point: 6.2081

>NTDB_id=298945 ES967_RS17860 WP_003228057.1 3433479..3436352(-) (uvrA) [Bacillus subtilis strain SRCM103696]
MAMDRIEVKGARAHNLKNIDVTIPRDQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDAIEG
LSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGKPHCPEHGIEITSQTIEQMVDRILEYPERTKLQVLAPIVSGR
KGAHVKVLEQIRKQGYVRVRIDGEMAELSDDIELEKNKKHSIEVVIDRIVVKEGVAARLSDSLETALRLGEGRVMIDVIG
EEELMFSEHHACPHCGFSIGELEPRLFSFNSPFGACPTCDGLGMKLEVDADLVIPNQDLSLKENAVAPWTPISSQYYPQL
LEAVCTHYGIDMDVPVKDLPKHQLDKVLYGSGDDLIYFRYENDFGQIREGEIQFEGVLRNIERRYKETGSDFIREQMEQY
MSQKSCPTCKGYRLKKEALAVLIDGRHIGKITELSVADALAFFKDLTLSEKDMQIANLILREIVERLSFLDKVGLDYLTL
SRAAGTLSGGEAQRIRLATQIGSRLSGVLYILDEPSIGLHQRDNDRLISALKNMRDLGNTLIVVEHDEDTMMAADYLIDI
GPGAGIHGGQVISAGTPEEVMEDPNSLTGSYLSGKKFIPLPPERRKPDGRYIEIKGASENNLKKVNAKFPLGTFTAVTGV
SGSGKSTLVNEILHKALAQKLHKAKAKPGSHKEIKGLDHLDKVIDIDQAPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK
VRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKSISDVLDMTVEDALSFFEN
IPKIKRKLQTLYDVGLGYITLGQPATTLSGGEAQRVKLASELHKRSTGRTLYILDEPTTGLHVDDIARLLVVLQRLVDNG
DTVLVIEHNLDIIKTADYIVDLGPEGGAGGGTIVASGTPEEITEVEESYTGRYLKPVIERDKTRMKSLLKAKETATS

Nucleotide


Download         Length: 2874 bp        

>NTDB_id=298945 ES967_RS17860 WP_003228057.1 3433479..3436352(-) (uvrA) [Bacillus subtilis strain SRCM103696]
ATGGCTATGGATCGGATAGAGGTGAAGGGAGCCAGGGCGCATAACCTGAAAAATATAGATGTAACGATTCCGAGAGATCA
GCTTGTCGTTGTCACGGGTTTGTCCGGATCAGGTAAATCCTCCCTTGCCTTTGACACGATATATGCTGAAGGACAGAGAC
GGTATGTCGAGTCGCTGTCTGCCTATGCCCGCCAGTTTTTAGGGCAAATGGATAAGCCGGATGTGGATGCAATTGAGGGG
CTCTCTCCCGCCATCAGCATTGATCAGAAAACAACGAGCCGCAATCCGAGGTCTACTGTCGGTACGGTAACTGAGATTTA
TGATTATCTGCGTCTTTTATATGCGAGAGTAGGGAAGCCTCATTGTCCGGAACACGGAATTGAGATTACATCCCAGACCA
TCGAGCAAATGGTGGACAGAATTCTGGAATACCCGGAACGGACGAAGCTTCAGGTGCTGGCGCCGATTGTCTCGGGCCGA
AAAGGCGCTCATGTCAAAGTGCTTGAACAGATTAGGAAACAAGGCTATGTCAGAGTCAGAATTGACGGCGAGATGGCTGA
GCTTTCCGACGATATCGAATTAGAAAAGAACAAGAAGCATTCCATTGAGGTAGTCATTGACCGGATTGTCGTGAAAGAAG
GCGTGGCAGCCCGGCTGTCAGATTCATTGGAAACGGCGCTTCGTTTAGGTGAAGGACGGGTTATGATCGATGTCATCGGT
GAGGAAGAGCTGATGTTCAGCGAGCATCATGCCTGTCCGCACTGCGGATTTTCAATTGGTGAGCTTGAGCCGCGTCTGTT
TTCGTTTAACAGTCCGTTCGGGGCGTGTCCGACGTGTGACGGTCTCGGAATGAAGCTTGAAGTGGATGCCGATCTTGTCA
TCCCCAATCAAGATTTGTCATTGAAGGAGAATGCGGTCGCCCCTTGGACACCGATCAGCTCACAATATTATCCTCAGCTG
CTTGAGGCAGTCTGCACCCACTACGGGATTGATATGGATGTGCCGGTCAAAGATTTGCCGAAGCATCAACTGGATAAAGT
GCTGTACGGCAGCGGGGATGACCTGATTTATTTCCGATATGAAAATGATTTTGGACAAATCCGCGAAGGTGAAATTCAAT
TTGAAGGCGTATTGCGCAACATTGAAAGACGCTATAAGGAGACAGGCTCCGATTTCATACGTGAGCAAATGGAGCAGTAT
ATGTCTCAGAAGTCTTGTCCGACGTGCAAAGGCTATCGGTTAAAGAAAGAGGCGCTTGCCGTACTGATTGACGGCCGCCA
CATTGGGAAAATTACCGAGCTGTCTGTCGCCGACGCACTTGCCTTCTTTAAAGATCTTACCCTTTCTGAGAAGGATATGC
AGATCGCCAATTTGATTTTGCGCGAAATTGTGGAGCGCTTAAGCTTTCTGGACAAAGTCGGCCTCGATTACCTGACATTG
AGCAGGGCAGCGGGTACATTGTCCGGAGGAGAGGCGCAGCGCATCAGGCTGGCGACTCAAATTGGCTCGCGTTTATCCGG
TGTGCTTTATATTTTAGATGAGCCGTCTATCGGTCTGCATCAGCGTGATAACGACCGCTTGATCAGCGCTCTGAAAAATA
TGAGAGACCTCGGGAACACGCTGATTGTTGTCGAACATGATGAGGACACGATGATGGCAGCAGATTATTTAATAGATATT
GGACCGGGAGCCGGCATTCACGGCGGACAGGTGATATCTGCGGGTACGCCGGAAGAAGTGATGGAAGATCCAAATTCATT
AACGGGCAGCTATTTATCAGGGAAAAAGTTTATCCCATTGCCTCCTGAAAGAAGAAAGCCGGACGGACGTTACATTGAAA
TTAAAGGTGCATCAGAAAACAACCTGAAAAAAGTGAATGCCAAGTTCCCGCTTGGGACGTTTACAGCAGTTACAGGTGTT
TCCGGTTCAGGAAAGAGTACACTCGTTAATGAAATTTTGCATAAGGCGCTGGCGCAAAAGCTTCATAAAGCGAAAGCGAA
GCCCGGCAGCCATAAAGAGATTAAAGGTTTGGATCATTTAGATAAAGTCATTGACATTGACCAGGCGCCAATCGGAAGAA
CGCCGAGATCCAACCCTGCGACATACACCGGTGTATTTGATGACATTCGTGATGTATTCGCGCAGACAAATGAAGCGAAG
GTCCGCGGCTATAAAAAAGGCCGTTTCAGCTTCAACGTGAAGGGCGGACGATGTGAAGCCTGCCGCGGAGACGGGATTAT
TAAAATTGAAATGCACTTCCTTCCTGACGTATACGTTCCATGCGAGGTGTGTCACGGCAAACGCTATAACCGTGAAACGC
TTGAAGTGACGTACAAAGGAAAAAGCATCTCTGATGTGCTTGATATGACGGTTGAAGATGCTCTTTCTTTCTTTGAAAAT
ATCCCGAAAATCAAACGCAAGCTCCAAACCCTTTATGATGTTGGTTTAGGTTATATTACGCTCGGCCAGCCGGCGACGAC
CTTGTCAGGCGGAGAAGCGCAGCGCGTGAAGCTCGCGTCAGAGCTGCACAAACGCTCAACCGGACGTACGCTCTACATTT
TAGATGAGCCGACGACAGGTTTGCATGTCGACGATATCGCCAGGCTTCTTGTCGTGCTGCAACGGTTGGTAGACAACGGA
GACACTGTACTGGTTATTGAGCACAATCTTGATATCATTAAGACGGCCGATTACATTGTGGATTTGGGCCCGGAAGGCGG
AGCCGGAGGCGGAACCATTGTCGCGTCTGGAACGCCTGAGGAAATCACTGAAGTTGAAGAATCGTATACAGGCCGTTATT
TAAAGCCTGTTATCGAACGTGACAAAACACGCATGAAATCGCTCTTGAAAGCAAAAGAAACAGCTACATCTTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(622-858)

UvrA DNA-binding domain (UvrA_DNA-bind)

(289-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

69.198

97.701

0.676
  uvrA Streptococcus pneumoniae TIGR4

69.198

97.701

0.676
  uvrA Streptococcus pneumoniae D39

69.198

97.701

0.676