Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DOZ91_RS25300 Genome accession   NZ_CP030063
Coordinates   5269403..5271118 (+) Length   571 a.a.
NCBI ID   WP_127778484.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain ZB201705     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5264403..5276118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOZ91_RS25275 (DOZ91_25705) - 5264511..5264744 (+) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -
  DOZ91_RS25280 (DOZ91_25710) - 5264746..5265639 (+) 894 WP_053535673.1 polyprenyl synthetase family protein -
  DOZ91_RS25285 (DOZ91_25715) dxs 5265889..5267781 (+) 1893 WP_048681832.1 1-deoxy-D-xylulose-5-phosphate synthase -
  DOZ91_RS25290 (DOZ91_25720) - 5267786..5268613 (+) 828 WP_034308281.1 TlyA family RNA methyltransferase -
  DOZ91_RS25295 (DOZ91_25725) argR 5268931..5269380 (+) 450 WP_034308279.1 transcriptional regulator ArgR -
  DOZ91_RS25300 (DOZ91_25730) recN 5269403..5271118 (+) 1716 WP_127778484.1 DNA repair protein RecN Machinery gene
  DOZ91_RS25305 (DOZ91_25735) spoIVB 5271280..5272572 (+) 1293 WP_053535672.1 SpoIVB peptidase -
  DOZ91_RS25310 (DOZ91_25740) spo0A 5272902..5273693 (+) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  DOZ91_RS25315 (DOZ91_25745) - 5274110..5274844 (+) 735 WP_053535671.1 glycerophosphodiester phosphodiesterase -
  DOZ91_RS25320 (DOZ91_25750) - 5275115..5275543 (+) 429 Protein_5013 transposase -
  DOZ91_RS25325 (DOZ91_25755) - 5275652..5275888 (-) 237 WP_034308264.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64523.46 Da        Isoelectric Point: 5.2858

>NTDB_id=298886 DOZ91_RS25300 WP_127778484.1 5269403..5271118(+) (recN) [Peribacillus frigoritolerans strain ZB201705]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISILREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=298886 DOZ91_RS25300 WP_127778484.1 5269403..5271118(+) (recN) [Peribacillus frigoritolerans strain ZB201705]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAAAGCGGTAAAAGCGTATG
CAGGGTAAATGGGAAACTGGTAACGATTTCCATTTTGCGTGAGATAGGGCGAACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTTGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAGTTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTCCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATCGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTTATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATTTATATATGGAAAAAACAATTTTCGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGGATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGCATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAAATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613

Multiple sequence alignment