Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | CT138_RS04625 | Genome accession | NZ_CP030062 |
| Coordinates | 939569..940123 (+) | Length | 184 a.a. |
| NCBI ID | WP_112110586.1 | Uniprot ID | - |
| Organism | Mannheimia varigena strain Teagasc | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 934569..945123
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CT138_RS04615 (CT138_04615) | - | 937681..938460 (+) | 780 | WP_112110585.1 | MerR family transcriptional regulator | - |
| CT138_RS04620 (CT138_04620) | - | 938666..939355 (-) | 690 | WP_025216721.1 | CPBP family intramembrane glutamic endopeptidase | - |
| CT138_RS04625 (CT138_04625) | pilF | 939569..940123 (+) | 555 | WP_112110586.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| CT138_RS04630 (CT138_04630) | - | 940124..942448 (+) | 2325 | WP_112110587.1 | Tex family protein | - |
| CT138_RS04635 (CT138_04635) | - | 942577..942819 (+) | 243 | WP_112110588.1 | hypothetical protein | - |
| CT138_RS04640 (CT138_04640) | - | 942967..943326 (+) | 360 | WP_112110589.1 | hypothetical protein | - |
| CT138_RS04645 (CT138_04645) | - | 943310..943861 (+) | 552 | WP_112110590.1 | hypothetical protein | - |
| CT138_RS04650 (CT138_04650) | - | 943876..944697 (-) | 822 | WP_112110591.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20968.68 Da Isoelectric Point: 7.6822
>NTDB_id=298822 CT138_RS04625 WP_112110586.1 939569..940123(+) (pilF) [Mannheimia varigena strain Teagasc]
MFAKYLKNITACITLFLLAACSSYTETASETEFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALTHDPNDYLPHSVLA
YYYQQTADAQNAEKAYQQALKLSQNRPDVRNNYGTFLCKQGQFQQAYQQFEQAVASPKPYYHQADSLENIILCAKKEPNP
QKVAETFIELEKLDKPRATLLKGN
MFAKYLKNITACITLFLLAACSSYTETASETEFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALTHDPNDYLPHSVLA
YYYQQTADAQNAEKAYQQALKLSQNRPDVRNNYGTFLCKQGQFQQAYQQFEQAVASPKPYYHQADSLENIILCAKKEPNP
QKVAETFIELEKLDKPRATLLKGN
Nucleotide
Download Length: 555 bp
>NTDB_id=298822 CT138_RS04625 WP_112110586.1 939569..940123(+) (pilF) [Mannheimia varigena strain Teagasc]
ATGTTTGCAAAATATTTGAAAAATATCACCGCTTGTATCACGCTGTTTTTGTTAGCGGCTTGTTCCTCTTACACCGAAAC
CGCTTCGGAAACCGAATTTAACCGTTCGGAAGCGGTGAAAGCCCGCATAAACTTAGCCCTTGCTTATTTGGAGCAGAACG
ATTTCCCCAAAGCGAAGCAGAATATTGACAAAGCCCTCACTCACGACCCGAACGATTACTTACCCCATTCGGTGCTTGCC
TACTATTATCAGCAAACTGCCGATGCACAAAATGCCGAAAAAGCCTATCAACAAGCCTTGAAATTAAGCCAAAACCGCCC
TGATGTGCGGAACAATTACGGCACTTTTTTATGTAAGCAAGGTCAATTTCAACAGGCTTATCAACAATTTGAACAGGCGG
TGGCAAGTCCTAAGCCTTATTATCACCAAGCGGATAGTTTAGAGAACATCATTTTATGTGCGAAAAAAGAGCCTAATCCG
CAAAAAGTTGCCGAAACATTTATTGAGCTTGAGAAGCTGGACAAACCTCGAGCCACATTATTGAAAGGAAATTAA
ATGTTTGCAAAATATTTGAAAAATATCACCGCTTGTATCACGCTGTTTTTGTTAGCGGCTTGTTCCTCTTACACCGAAAC
CGCTTCGGAAACCGAATTTAACCGTTCGGAAGCGGTGAAAGCCCGCATAAACTTAGCCCTTGCTTATTTGGAGCAGAACG
ATTTCCCCAAAGCGAAGCAGAATATTGACAAAGCCCTCACTCACGACCCGAACGATTACTTACCCCATTCGGTGCTTGCC
TACTATTATCAGCAAACTGCCGATGCACAAAATGCCGAAAAAGCCTATCAACAAGCCTTGAAATTAAGCCAAAACCGCCC
TGATGTGCGGAACAATTACGGCACTTTTTTATGTAAGCAAGGTCAATTTCAACAGGCTTATCAACAATTTGAACAGGCGG
TGGCAAGTCCTAAGCCTTATTATCACCAAGCGGATAGTTTAGAGAACATCATTTTATGTGCGAAAAAAGAGCCTAATCCG
CAAAAAGTTGCCGAAACATTTATTGAGCTTGAGAAGCTGGACAAACCTCGAGCCACATTATTGAAAGGAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
63.102 |
100 |
0.641 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
47.674 |
93.478 |
0.446 |