Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   MAE_RS17875 Genome accession   NC_010296
Coordinates   3790951..3793962 (+) Length   1003 a.a.
NCBI ID   WP_041804194.1    Uniprot ID   -
Organism   Microcystis aeruginosa NIES-843     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3785951..3798962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MAE_RS17850 (MAE_41230) - 3786138..3786506 (-) 369 WP_002760814.1 2Fe-2S iron-sulfur cluster-binding protein -
  MAE_RS17855 (MAE_41240) - 3786671..3788917 (-) 2247 WP_012266818.1 hypothetical protein -
  MAE_RS17860 (MAE_41250) - 3788914..3789855 (-) 942 WP_012266819.1 homogentisate phytyltransferase -
  MAE_RS17870 (MAE_41260) - 3790182..3790844 (-) 663 WP_002795753.1 class I SAM-dependent methyltransferase -
  MAE_RS17875 (MAE_41270) pilL-C 3790951..3793962 (+) 3012 WP_041804194.1 hybrid sensor histidine kinase/response regulator Machinery gene
  MAE_RS17880 (MAE_41280) - 3793975..3794373 (-) 399 WP_012266821.1 hypothetical protein -
  MAE_RS17890 (MAE_41300) - 3794752..3795138 (-) 387 WP_012266823.1 hypothetical protein -
  MAE_RS17895 (MAE_41310) - 3795194..3795946 (-) 753 WP_002795748.1 class I SAM-dependent methyltransferase -
  MAE_RS17900 (MAE_41320) - 3796027..3796518 (-) 492 WP_002795747.1 hypothetical protein -
  MAE_RS17905 (MAE_41330) uvrB 3796710..3798713 (+) 2004 WP_012266824.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 1003 a.a.        Molecular weight: 110105.26 Da        Isoelectric Point: 4.4184

>NTDB_id=29875 MAE_RS17875 WP_041804194.1 3790951..3793962(+) (pilL-C) [Microcystis aeruginosa NIES-843]
MMKPDSDHLFNEDLEQLLESLEDKDADGDEALEELFGDSINWEESATNDLYSTPGPAPKLEPEDGDDLESLLLENAVVLD
SEAIIAIGNPNFYDSLEDLEAFLEKPTPPAQPPLPDIFESLEAFLWESPAVDWVAAVEPLKGLESLEIAPESLLEDEFKD
LEKLLEETNQVMAANPAASVSPPVGSKNLRPLVSKAFEQTMRVPIKQLDNLSNLIGELVVKRNRLEEEQDRLRLFLDNLL
TCVQHLGDVGSRMQDLYERSLLEGALLASRNSGGAIGYGRVQGENQGDSAMAGELDALEIDRFTDFHLLSQEMIELIVRV
RESASDLQFVVDETDQVTRSLRQATTQLQEGMTKSRMVPFSQAADRLPRAIRDISLKLDKQAKLKVEGGDVLIDKMLLEH
LNSPMTHLVNNAITHGIESPQERMAKGKPALGTISVRAFLQGNQTVITVGDDGAGIDADQVKRKAIEKGLIGDQEAEHLS
PQEVYKLLFHPGFSTKDQADDFAGRGVGLDVVQTSLIDVRGTVTIDSVLGKGSTFTIRLPLTLSICKALCCVSNHARIGF
SMDGVEDMKDFRSSDIQMDREGRRCVFWQNTLLPFQPLSELLSYNRQLSRGSFYTGKQEQDSFSIVILRGGNNLLAVQVD
QVIGELEIVIKQIEGPIPKTAGIAGATVLGDGTVMPIGDVLELIDIARGRLRTDNGGLWRQPAPPVGVETRQKSGAMVLI
VDDSITVRGLLSLSFSKAGYRVEQARDGQEAWEKLRGGLPCDIVFCDIEMPRMNGLELLYNLQKDPRLASIPVALLTSRG
AERHRQVAATLGASGYFTKPYTERDLLSAAERMIAGEVLLANSIKATRNQPLSPDATIIDSNPANFFAQSTPRVLIVDDS
VTAREMLAISLVKAGYRIEEARDGLEAWEKLRAGLACDLILCDLEMPRLNGLELLSRLQEDEQLQGIPVAMITSRGSQKM
QHLAAAKGAKGYFVKPYIEDVLLSAAQRLIAGEVLIQKDSPAD

Nucleotide


Download         Length: 3012 bp        

>NTDB_id=29875 MAE_RS17875 WP_041804194.1 3790951..3793962(+) (pilL-C) [Microcystis aeruginosa NIES-843]
ATGATGAAACCCGACTCGGATCATCTCTTTAACGAGGATCTCGAACAGCTGTTAGAGAGTTTAGAAGACAAAGACGCCGA
CGGTGACGAGGCTCTAGAGGAACTGTTTGGCGATAGTATCAATTGGGAAGAATCCGCCACTAATGATCTTTATTCTACCC
CCGGACCGGCTCCCAAGTTAGAACCGGAAGATGGGGATGATCTCGAATCTCTGCTGCTAGAAAACGCGGTGGTCCTGGAC
TCAGAAGCAATTATAGCCATCGGCAACCCCAATTTTTACGACAGCCTCGAAGACTTAGAAGCTTTTCTGGAAAAACCCAC
GCCACCGGCGCAACCGCCACTACCAGACATCTTTGAATCCCTAGAGGCCTTCCTCTGGGAATCCCCAGCAGTGGACTGGG
TGGCCGCGGTGGAACCTCTGAAAGGGTTAGAATCACTGGAAATTGCCCCAGAAAGCCTCCTAGAGGATGAATTCAAGGAT
TTAGAAAAACTCCTCGAAGAAACCAATCAGGTGATGGCAGCAAATCCGGCGGCCAGTGTCAGTCCGCCAGTCGGGTCAAA
AAACCTGCGTCCCCTTGTCAGTAAAGCTTTTGAACAGACGATGCGGGTGCCGATCAAACAATTGGATAACCTCAGCAATC
TGATCGGGGAACTGGTGGTTAAACGCAATCGCCTTGAAGAGGAACAGGATCGCCTGCGTCTCTTTTTAGATAATTTGCTA
ACCTGCGTCCAACATCTGGGTGATGTGGGCAGTCGGATGCAGGATCTCTATGAAAGAAGCCTCCTAGAAGGGGCTTTACT
GGCTAGTCGCAATTCCGGTGGTGCCATCGGTTACGGTAGAGTTCAGGGAGAAAATCAGGGGGATTCGGCCATGGCCGGCG
AACTAGATGCCCTAGAGATCGACCGTTTTACCGATTTCCATTTATTATCCCAAGAGATGATCGAATTGATCGTACGAGTG
CGAGAATCGGCCTCTGATCTTCAATTTGTCGTCGATGAAACCGATCAGGTGACGCGCAGTCTGCGACAGGCCACCACCCA
ACTACAGGAAGGGATGACCAAATCGCGCATGGTTCCCTTTAGTCAAGCCGCCGATCGCCTACCCCGGGCAATTCGCGATA
TTTCCCTGAAACTCGATAAACAAGCCAAATTAAAAGTGGAAGGGGGTGATGTTCTCATCGATAAGATGCTCCTCGAACAT
CTCAATAGTCCCATGACCCATCTGGTCAACAATGCGATCACCCACGGCATTGAATCACCCCAAGAACGTATGGCCAAAGG
GAAACCTGCCCTCGGAACCATCTCTGTCCGGGCATTCCTACAGGGGAATCAAACCGTGATCACCGTTGGTGATGATGGGG
CTGGTATTGATGCTGATCAGGTGAAACGCAAGGCGATCGAAAAAGGCCTGATCGGCGATCAGGAAGCTGAACACCTCAGT
CCCCAAGAAGTCTATAAACTCCTCTTTCACCCTGGTTTTAGTACCAAAGATCAGGCCGATGATTTTGCTGGTCGTGGGGT
GGGTTTAGATGTGGTGCAGACCAGTTTAATCGATGTGCGCGGGACCGTTACTATTGACTCGGTACTGGGCAAAGGAAGCA
CTTTTACCATCCGTTTACCCCTAACCCTGAGTATCTGTAAGGCCCTCTGTTGTGTTAGTAATCATGCGCGCATCGGGTTC
TCCATGGACGGAGTGGAAGATATGAAGGATTTCCGGTCCAGCGATATCCAAATGGATAGGGAGGGACGGCGCTGCGTTTT
CTGGCAAAATACTTTACTACCCTTCCAACCCTTGAGCGAATTGCTTTCCTACAATCGGCAACTAAGTCGCGGTAGTTTTT
ATACTGGCAAACAGGAGCAAGACTCTTTTTCGATCGTGATCCTGCGCGGTGGTAATAATCTCCTCGCAGTACAGGTGGAT
CAAGTGATCGGTGAACTGGAAATCGTCATCAAACAGATCGAAGGACCGATTCCGAAAACGGCTGGGATTGCTGGGGCGAC
GGTTTTGGGCGATGGTACGGTGATGCCGATCGGGGATGTGTTAGAGTTAATCGACATCGCCAGGGGTCGTCTGCGTACCG
ATAACGGTGGTCTTTGGCGCCAACCTGCCCCCCCCGTAGGGGTGGAAACTAGGCAAAAATCGGGGGCTATGGTTCTGATT
GTCGATGATTCGATTACTGTCCGGGGATTGCTCTCTTTAAGCTTTAGTAAAGCCGGTTATCGTGTGGAACAGGCCCGGGA
TGGTCAAGAAGCTTGGGAAAAATTACGCGGCGGTTTGCCCTGTGATATCGTTTTCTGCGATATCGAGATGCCCCGCATGA
ATGGCCTAGAATTACTGTATAATTTGCAAAAAGACCCCCGATTAGCGTCGATTCCCGTGGCTTTATTGACTTCCCGAGGA
GCGGAACGTCATCGTCAGGTGGCGGCGACATTAGGGGCCAGTGGTTATTTTACCAAGCCCTACACGGAAAGAGATTTACT
CTCGGCGGCTGAAAGAATGATTGCGGGGGAAGTGTTACTAGCTAATAGTATTAAAGCGACTCGTAATCAGCCTTTATCCC
CCGATGCAACGATTATTGACAGTAATCCCGCTAATTTCTTTGCACAATCGACTCCTCGGGTCTTGATTGTCGATGATTCG
GTAACGGCGCGGGAAATGTTAGCGATTTCTTTGGTGAAAGCTGGTTATCGCATTGAAGAGGCCCGAGACGGTTTAGAAGC
ATGGGAAAAATTACGGGCTGGATTAGCTTGTGATCTGATTCTCTGCGATCTCGAAATGCCTCGCCTGAATGGGTTAGAAT
TGCTCTCTCGTCTGCAAGAGGATGAACAACTTCAGGGGATACCAGTAGCGATGATTACCTCGCGAGGGTCGCAAAAAATG
CAGCATCTCGCCGCTGCTAAAGGGGCAAAAGGTTATTTTGTCAAGCCCTATATTGAGGATGTTTTACTGTCGGCAGCCCA
ACGTTTAATCGCTGGTGAGGTGTTAATCCAAAAAGACAGTCCCGCGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(718-830)

Response regulator receiver domain (Response_reg)

(874-985)

CheW-like domain (CheW)

(549-685)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(405-542)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(199-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

66.589

85.942

0.572

Multiple sequence alignment