Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SPP_RS02970 Genome accession   NC_012467
Coordinates   541978..542244 (+) Length   88 a.a.
NCBI ID   WP_001844589.1    Uniprot ID   -
Organism   Streptococcus pneumoniae P1031     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 536978..547244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPP_RS02945 (SPP_0596) - 537192..537701 (+) 510 WP_000619941.1 N-acetyltransferase -
  SPP_RS02950 (SPP_0597) pheT 537778..540180 (+) 2403 WP_000909142.1 phenylalanine--tRNA ligase subunit beta -
  SPP_RS02955 (SPP_0598) - 540248..541249 (-) 1002 WP_000597991.1 endonuclease/exonuclease/phosphatase family protein -
  SPP_RS02960 (SPP_0599) - 541405..541852 (+) 448 Protein_564 IS30 family transposase -
  SPP_RS02970 (SPP_0601) HI0659 541978..542244 (+) 267 WP_001844589.1 helix-turn-helix domain-containing protein Machinery gene
  SPP_RS02975 (SPP_0602) metE 542504..544753 (+) 2250 WP_000108199.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SPP_RS02980 (SPP_0603) metF 544817..545683 (+) 867 WP_000089982.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9629.24 Da        Isoelectric Point: 5.1633

>NTDB_id=29875 SPP_RS02970 WP_001844589.1 541978..542244(+) (HI0659) [Streptococcus pneumoniae P1031]
MEGCPSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKILAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=29875 SPP_RS02970 WP_001844589.1 541978..542244(+) (HI0659) [Streptococcus pneumoniae P1031]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGATACTAGCAGTC
GTCCGACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment