Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DOM24_RS12800 Genome accession   NZ_CP030031
Coordinates   2713061..2713696 (+) Length   211 a.a.
NCBI ID   WP_111282413.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2708061..2718696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS12790 (DOM24_12790) - 2710196..2711005 (-) 810 WP_111282409.1 NAD-dependent epimerase/dehydratase family protein -
  DOM24_RS12795 (DOM24_12795) recG 2711029..2713074 (+) 2046 WP_111282411.1 ATP-dependent DNA helicase RecG -
  DOM24_RS12800 (DOM24_12800) comF 2713061..2713696 (+) 636 WP_111282413.1 ComF family protein Machinery gene
  DOM24_RS12805 (DOM24_12805) - 2713693..2714094 (-) 402 WP_111282415.1 NUDIX domain-containing protein -
  DOM24_RS12810 (DOM24_12810) - 2714104..2714685 (-) 582 WP_111282825.1 TIGR00730 family Rossman fold protein -
  DOM24_RS12815 (DOM24_12815) - 2714850..2715863 (+) 1014 WP_005018301.1 magnesium and cobalt transport protein CorA -
  DOM24_RS12820 (DOM24_12820) - 2715898..2716188 (-) 291 WP_111282418.1 lipid asymmetry maintenance protein MlaB -
  DOM24_RS12825 (DOM24_12825) - 2716212..2716850 (-) 639 WP_005024404.1 phospholipid-binding protein MlaC -
  DOM24_RS12830 (DOM24_12830) - 2716868..2717530 (-) 663 WP_017400884.1 outer membrane lipid asymmetry maintenance protein MlaD -
  DOM24_RS12835 (DOM24_12835) mlaE 2717530..2718306 (-) 777 WP_111282420.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24264.42 Da        Isoelectric Point: 9.0300

>NTDB_id=298584 DOM24_RS12800 WP_111282413.1 2713061..2713696(+) (comF) [Acinetobacter radioresistens strain LH6]
MPMFNPSSLLRPISRLLPCPLCSSSLQMQHGVCHDCWKQLPWYRQTVERQELDIHVACGYQYPIDRIIQQFKYEQQLNYQ
QLLTASILTLRLPKVQAIVPMPISTERLIERGYNQSLVIAKILARELNVPVWQPVIRLAQHSQKGLSRLERLNQIEMQFQ
PILTERRRYRRVLMLDDVVTTGSSLSALAQALTQLGCQHIFAACIAAAETA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=298584 DOM24_RS12800 WP_111282413.1 2713061..2713696(+) (comF) [Acinetobacter radioresistens strain LH6]
ATGCCTATGTTTAACCCATCTTCTTTACTCAGGCCTATCTCACGGCTGCTACCCTGCCCGCTTTGTAGCAGCAGTTTGCA
AATGCAGCATGGGGTTTGTCATGATTGCTGGAAACAGCTGCCTTGGTATCGGCAGACTGTAGAACGACAAGAATTAGACA
TTCATGTTGCCTGTGGCTATCAGTATCCAATAGATCGCATCATCCAGCAGTTTAAATATGAGCAGCAGTTAAACTATCAG
CAGTTACTGACTGCATCGATACTAACCCTCAGGTTACCTAAAGTTCAGGCCATTGTGCCTATGCCCATATCAACCGAACG
TTTAATTGAACGCGGCTATAATCAGTCACTGGTCATTGCAAAAATTCTAGCCCGTGAGCTGAATGTTCCGGTCTGGCAAC
CTGTAATTCGGCTGGCTCAGCATTCGCAAAAAGGCTTATCGCGACTCGAACGTCTGAATCAGATTGAAATGCAATTTCAG
CCGATCCTCACCGAACGCCGGCGTTACCGCCGGGTATTAATGCTAGACGATGTAGTGACTACAGGCAGCTCACTTTCGGC
CTTGGCTCAAGCCCTGACCCAGCTGGGCTGCCAGCATATTTTTGCTGCGTGTATTGCAGCCGCAGAAACAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.398

100

0.564
  comF Acinetobacter baumannii D1279779

56.398

100

0.564

Multiple sequence alignment