Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | DOM24_RS05330 | Genome accession | NZ_CP030031 |
| Coordinates | 1155617..1156003 (+) | Length | 128 a.a. |
| NCBI ID | WP_111280924.1 | Uniprot ID | A0A3D3FZS4 |
| Organism | Acinetobacter radioresistens strain LH6 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1150617..1161003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DOM24_RS05300 (DOM24_05300) | kdsB | 1151462..1152223 (+) | 762 | WP_111280916.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| DOM24_RS05305 (DOM24_05305) | - | 1152241..1153224 (+) | 984 | WP_111280918.1 | DNA polymerase III subunit delta' C-terminal domain-containing protein | - |
| DOM24_RS05310 (DOM24_05310) | - | 1153243..1153584 (+) | 342 | WP_005014707.1 | PilZ domain-containing protein | - |
| DOM24_RS05315 (DOM24_05315) | - | 1153628..1154401 (+) | 774 | WP_111280920.1 | TatD family hydrolase | - |
| DOM24_RS05320 (DOM24_05320) | - | 1154441..1155049 (+) | 609 | WP_101162145.1 | TetR/AcrR family transcriptional regulator | - |
| DOM24_RS05325 (DOM24_05325) | - | 1155064..1155627 (+) | 564 | WP_111280922.1 | type II secretion system protein | - |
| DOM24_RS05330 (DOM24_05330) | xcpV | 1155617..1156003 (+) | 387 | WP_111280924.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| DOM24_RS05335 (DOM24_05335) | xcpW | 1156000..1156635 (+) | 636 | WP_005405646.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| DOM24_RS05340 (DOM24_05340) | gspK | 1156659..1157606 (+) | 948 | WP_111280926.1 | type II secretion system minor pseudopilin GspK | - |
| DOM24_RS05345 (DOM24_05345) | - | 1157703..1158299 (+) | 597 | WP_111280928.1 | 6-carboxytetrahydropterin synthase | - |
| DOM24_RS05350 (DOM24_05350) | ung | 1158344..1159057 (+) | 714 | WP_005014692.1 | uracil-DNA glycosylase | - |
| DOM24_RS05355 (DOM24_05355) | - | 1159054..1160178 (+) | 1125 | WP_111280930.1 | enoyl-CoA hydratase/isomerase family protein | - |
| DOM24_RS05360 (DOM24_05360) | tadA | 1160182..1160673 (+) | 492 | WP_005014690.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 128 a.a. Molecular weight: 14106.27 Da Isoelectric Point: 7.0119
>NTDB_id=298572 DOM24_RS05330 WP_111280924.1 1155617..1156003(+) (xcpV) [Acinetobacter radioresistens strain LH6]
MKPKGFTLLEVMVALAIFATAAVALTKVAMQYTQATSNAILRTKAQFVGMNEIVLMEMNQAWLQGTESKQVTSQGETWQI
DKQAASTISPNVQRIEVQISLFNTEQGKVENGIATLVFFNHPLKENTS
MKPKGFTLLEVMVALAIFATAAVALTKVAMQYTQATSNAILRTKAQFVGMNEIVLMEMNQAWLQGTESKQVTSQGETWQI
DKQAASTISPNVQRIEVQISLFNTEQGKVENGIATLVFFNHPLKENTS
Nucleotide
Download Length: 387 bp
>NTDB_id=298572 DOM24_RS05330 WP_111280924.1 1155617..1156003(+) (xcpV) [Acinetobacter radioresistens strain LH6]
GTGAAACCTAAAGGCTTTACATTACTTGAAGTTATGGTTGCGCTAGCAATTTTTGCGACAGCAGCAGTTGCCCTGACAAA
AGTAGCCATGCAATATACACAAGCCACCTCAAATGCAATTTTAAGGACAAAAGCGCAATTTGTAGGTATGAATGAAATTG
TTCTCATGGAAATGAATCAGGCGTGGCTACAGGGAACAGAGTCTAAACAGGTAACATCTCAAGGTGAAACCTGGCAAATT
GACAAACAGGCAGCTTCCACCATCAGTCCAAATGTACAGCGTATTGAAGTACAAATTAGTCTGTTTAATACAGAGCAGGG
TAAGGTTGAAAATGGAATTGCGACCTTGGTGTTTTTTAATCATCCACTCAAAGAAAATACTTCATGA
GTGAAACCTAAAGGCTTTACATTACTTGAAGTTATGGTTGCGCTAGCAATTTTTGCGACAGCAGCAGTTGCCCTGACAAA
AGTAGCCATGCAATATACACAAGCCACCTCAAATGCAATTTTAAGGACAAAAGCGCAATTTGTAGGTATGAATGAAATTG
TTCTCATGGAAATGAATCAGGCGTGGCTACAGGGAACAGAGTCTAAACAGGTAACATCTCAAGGTGAAACCTGGCAAATT
GACAAACAGGCAGCTTCCACCATCAGTCCAAATGTACAGCGTATTGAAGTACAAATTAGTCTGTTTAATACAGAGCAGGG
TAAGGTTGAAAATGGAATTGCGACCTTGGTGTTTTTTAATCATCCACTCAAAGAAAATACTTCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
78.226 |
96.875 |
0.758 |