Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   DOM24_RS01375 Genome accession   NZ_CP030031
Coordinates   307231..309456 (-) Length   741 a.a.
NCBI ID   WP_111280252.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302231..314456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS01355 (DOM24_01355) - 302495..303448 (-) 954 WP_005016920.1 DnaJ C-terminal domain-containing protein -
  DOM24_RS01360 (DOM24_01360) - 303604..304065 (-) 462 WP_005016918.1 DUF2147 domain-containing protein -
  DOM24_RS01365 (DOM24_01365) - 304390..305265 (-) 876 WP_005016915.1 Hsp33 family molecular chaperone HslO -
  DOM24_RS01370 (DOM24_01370) - 305315..307147 (-) 1833 WP_111280249.1 cation:proton antiporter -
  DOM24_RS01375 (DOM24_01375) priA 307231..309456 (-) 2226 WP_111280252.1 primosomal protein N' Machinery gene
  DOM24_RS01380 (DOM24_01380) gspF 309612..310817 (+) 1206 WP_111280254.1 type II secretion system inner membrane protein GspF -
  DOM24_RS01385 (DOM24_01385) gspG 310854..311291 (+) 438 WP_111280256.1 type II secretion system major pseudopilin GspG -
  DOM24_RS01390 (DOM24_01390) - 311628..311963 (+) 336 WP_111280258.1 hypothetical protein -
  DOM24_RS01395 (DOM24_01395) lnt 312041..313600 (-) 1560 WP_111280260.1 apolipoprotein N-acyltransferase -
  DOM24_RS01400 (DOM24_01400) - 313597..314436 (-) 840 WP_005016900.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84232.55 Da        Isoelectric Point: 9.2403

>NTDB_id=298563 DOM24_RS01375 WP_111280252.1 307231..309456(-) (priA) [Acinetobacter radioresistens strain LH6]
MPSSSHNNCCIYRVRVAVPVHLYDSFDYLLSAEQYLQAEVGARVAVSFGRQNLIGIIVEKISPDVMPDPRIKLKAITELL
DKEAIIDSKVLSLLTWSAQYYQFPLGEVMQCALPGLLRQGKPLNLLARVWKVVQPDAEQLLKRSIKQQDAYKILKLHAAG
TTEDILNLSGVETATLKALEKKEIVRCELTAINTTPEPVQLAQMPLTPNEEQHKAIQRILKSLKKFQAFLLDGLTGSGKT
EVYLQVMYEVLKQGKQILVLVPEIGLTPQTISRFKSRFNVDIVLLHSGLSESKRLQAWQHAQTGKASIILGTRSAIYTSL
PRLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSLDSYHLVEQNKLTRLELNQRAGNAVLPKMQL
IDLKVAKKQHGISEQLIKQIQQRLDKKEQVLVFLNRRGYAPVLVCNHCGWQAKCPHCDAHFTLHTQPYNHLHCHHCGSIH
RVPESCPECQQTTLKTLGMGTAKVEETLTELFPDFDVIRVDRDSTSRVGQWDRIYQRIHQSQPAILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSFDFRAPERTAQLIIQVAGRAGRGDRRGEVYLQTLRPDHPLLTTLIEKDYRAFAKQALIERQQAQL
PPYRYTVLVRADSRNQQYSQEFLAEIARKLRELAGSQVDIWGPIPAPMERKAGRYRAHLVLLSADRAQLHFYLRQWWVMV
VQQPRQHQLKLSIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=298563 DOM24_RS01375 WP_111280252.1 307231..309456(-) (priA) [Acinetobacter radioresistens strain LH6]
ATGCCTAGCTCGTCCCATAATAACTGCTGTATATACCGTGTCCGGGTAGCTGTACCTGTTCATCTCTATGATAGTTTTGA
CTATCTGCTTAGTGCCGAACAATATCTACAGGCAGAAGTCGGTGCGCGGGTAGCAGTATCTTTTGGACGGCAGAATCTGA
TTGGTATCATTGTAGAAAAAATTTCTCCCGATGTTATGCCTGATCCGCGTATCAAGCTTAAGGCTATTACTGAGCTGCTC
GACAAGGAAGCCATTATAGATAGCAAAGTTTTAAGTTTGTTGACATGGTCTGCACAGTATTATCAATTTCCTTTGGGTGA
GGTAATGCAATGTGCTCTACCCGGCCTGTTGCGTCAGGGTAAACCGTTAAATCTGCTGGCTCGAGTCTGGAAGGTGGTAC
AGCCTGATGCAGAACAGCTGCTCAAGCGTTCAATCAAGCAGCAAGATGCTTATAAGATTTTAAAATTACATGCAGCCGGT
ACAACAGAAGACATTCTGAATTTAAGTGGTGTTGAAACTGCCACCTTAAAAGCTCTTGAAAAAAAAGAAATTGTCCGCTG
TGAATTAACAGCAATAAATACCACGCCTGAACCGGTGCAGCTGGCGCAAATGCCACTCACACCCAATGAAGAACAGCACA
AAGCAATTCAGCGTATTTTAAAATCATTGAAGAAATTTCAGGCCTTCTTACTTGATGGTTTGACTGGTAGCGGCAAAACA
GAAGTTTATTTGCAGGTGATGTACGAAGTACTAAAACAGGGCAAGCAGATATTGGTTCTGGTTCCCGAAATCGGGTTGAC
ACCTCAAACCATTTCCCGGTTTAAATCACGGTTTAATGTAGATATTGTACTATTACATTCTGGTTTGAGTGAATCCAAAC
GTTTGCAAGCATGGCAGCATGCCCAAACCGGCAAGGCTTCCATTATTCTCGGAACCCGTTCAGCAATTTATACGTCGTTG
CCCCGGCTGGGACTGATTATTCTGGATGAGGAGCATGATCTGTCATTCAAGCAACAGGAAGGCTTTCGCTACCATGCCCG
TGACGTAGCTCTCTACCGTGCCCATCTGGAAAACTGTCCGATTATTCTTGGCTCAGCCACACCCAGTCTGGATAGCTATC
ATCTGGTAGAACAGAATAAACTGACACGACTGGAACTTAACCAGCGGGCTGGCAATGCGGTCTTACCCAAAATGCAGTTA
ATAGATCTGAAAGTAGCCAAAAAACAGCATGGAATTAGTGAACAGCTCATCAAGCAGATTCAGCAGCGGCTGGACAAAAA
AGAACAGGTGCTGGTTTTTTTAAACCGGCGTGGTTATGCGCCGGTACTGGTCTGTAATCATTGTGGCTGGCAGGCCAAAT
GCCCCCATTGTGATGCGCATTTTACTCTGCATACACAGCCCTATAATCATCTGCACTGTCATCATTGTGGTTCCATTCAT
CGTGTACCGGAAAGCTGTCCCGAATGTCAGCAAACGACCTTAAAAACGCTCGGGATGGGCACTGCCAAGGTTGAAGAAAC
CCTGACCGAGCTCTTTCCAGATTTTGATGTAATTCGTGTGGACCGTGACAGTACCAGCCGGGTTGGCCAATGGGACCGTA
TCTATCAGCGGATTCATCAAAGCCAGCCTGCTATTTTACTCGGTACCCAAATGTTAGCCAAGGGCCATCATTTTCCCTAC
GTGACCTTGGTTGCGATTCTGGATATTGATGCCGGACTGCTCAGCTTTGATTTTCGTGCGCCGGAACGTACAGCCCAGCT
CATCATTCAGGTGGCTGGTCGTGCTGGCCGTGGAGACCGCAGAGGCGAAGTCTATCTACAAACATTAAGGCCTGATCATC
CACTGTTAACTACATTGATCGAGAAAGACTACCGTGCTTTTGCCAAACAAGCACTCATTGAGCGCCAGCAGGCACAGCTG
CCGCCTTATCGTTATACGGTACTGGTACGAGCCGACTCCAGAAACCAGCAATACAGTCAGGAATTTTTAGCTGAAATTGC
TCGTAAGCTACGTGAACTTGCAGGTAGTCAGGTTGATATCTGGGGCCCTATCCCTGCCCCTATGGAGCGTAAGGCGGGTC
GCTACCGGGCCCATCTGGTCCTGCTTTCAGCTGACCGGGCACAGCTGCATTTTTATTTACGGCAATGGTGGGTGATGGTA
GTACAACAGCCACGACAGCATCAGTTAAAGCTGAGTATCGACGTTGATCCACAGGAACTCAGCTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

75.51

99.19

0.749

Multiple sequence alignment