Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ERO09_RS00870 Genome accession   NZ_CP035368
Coordinates   197668..198906 (+) Length   412 a.a.
NCBI ID   WP_126469747.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain LC_1315_18     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 192668..203906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERO09_RS00840 (ERO09_00830) - 192917..193203 (+) 287 Protein_159 PTS sugar transporter subunit IIC -
  ERO09_RS00845 (ERO09_00835) - 193331..193876 (+) 546 WP_128786839.1 carboxymuconolactone decarboxylase family protein -
  ERO09_RS00850 (ERO09_00840) - 193966..194802 (-) 837 WP_128786840.1 neutral zinc metallopeptidase -
  ERO09_RS00855 (ERO09_00845) lysM 194980..195420 (+) 441 WP_128786841.1 peptidoglycan-binding protein LysM -
  ERO09_RS00860 (ERO09_00850) tig 195634..196932 (+) 1299 WP_128786842.1 trigger factor -
  ERO09_RS00865 (ERO09_00855) clpP 197077..197658 (+) 582 WP_049357886.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  ERO09_RS00870 (ERO09_00860) clpX 197668..198906 (+) 1239 WP_126469747.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ERO09_RS00875 (ERO09_00865) secE 199028..199444 (+) 417 WP_049357890.1 preprotein translocase subunit SecE -
  ERO09_RS00880 (ERO09_00870) nusG 199446..200003 (+) 558 WP_049367260.1 transcription termination/antitermination protein NusG -
  ERO09_RS00885 (ERO09_00875) rplK 200175..200603 (+) 429 WP_014064251.1 50S ribosomal protein L11 -
  ERO09_RS00890 (ERO09_00880) rplA 200608..201297 (+) 690 WP_005695230.1 50S ribosomal protein L1 -
  ERO09_RS00895 (ERO09_00885) - 201453..202598 (-) 1146 WP_128786844.1 iron-containing alcohol dehydrogenase -
  ERO09_RS00900 (ERO09_00890) - 202647..203828 (-) 1182 WP_128786845.1 glutathionylspermidine synthase family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45666.05 Da        Isoelectric Point: 4.5577

>NTDB_id=298372 ERO09_RS00870 WP_126469747.1 197668..198906(+) (clpX) [Haemophilus parainfluenzae strain LC_1315_18]
MTTNDNDLHCSFCGREKSEVGKLIAGTEGYICNECIELCHSMLEDSGEIDTPSELAVEEKLPTPHEIRAHLDDYVIGQDY
AKKVLSVAVYNHYKRLRTNHQSNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVLQ
KLLQNCDYDTEKAEQGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASVPPQGGRKHPQQEMLKVDTSKI
LFICGGAFAGLDKIIGKRTQTDTGIGFDAKVEKEEEKENLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEEALI
QILTQPKNALTKQYQALFGLEDVELEFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSIENLQKVIVDEETI
VDNKPPKLEYKN

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=298372 ERO09_RS00870 WP_126469747.1 197668..198906(+) (clpX) [Haemophilus parainfluenzae strain LC_1315_18]
ATGACAACAAATGATAACGATCTTCACTGTTCTTTCTGTGGAAGAGAAAAAAGTGAAGTAGGTAAATTAATTGCAGGTAC
AGAGGGTTATATCTGTAACGAATGTATCGAGCTTTGCCACAGTATGTTGGAAGACAGTGGAGAAATTGACACACCTAGCG
AACTGGCCGTTGAAGAAAAATTACCGACACCGCACGAAATTCGTGCGCACTTAGATGATTATGTGATTGGGCAAGATTAT
GCGAAAAAAGTCTTGTCAGTGGCGGTTTACAATCACTATAAACGCTTACGCACGAACCACCAAAGCAATGATGTGGAATT
AGGTAAAAGTAACATCTTGTTAATCGGTCCAACAGGTAGCGGTAAAACTTTATTAGCACAAACCTTGGCGCGTCGTTTGA
ATGTGCCTTTTGCTATGGCCGATGCGACGACGTTAACTGAAGCCGGTTATGTGGGCGAAGATGTGGAAAACGTGCTGCAA
AAATTATTGCAAAACTGCGATTACGATACGGAAAAAGCAGAGCAGGGCATTATCTATATTGATGAAATTGATAAAATCAG
CCGTAAATCAGAAGGTGCGTCTATTACTCGCGATGTGTCTGGTGAAGGTGTGCAACAAGCCTTATTGAAATTAATTGAAG
GCACTATCGCATCTGTACCGCCACAAGGTGGACGTAAACACCCTCAACAAGAAATGTTGAAAGTGGATACCTCAAAAATC
CTCTTTATTTGTGGTGGGGCATTTGCTGGCTTAGATAAAATTATCGGTAAGCGTACACAAACTGATACCGGAATTGGTTT
TGATGCGAAAGTAGAGAAGGAAGAAGAGAAAGAAAATCTTTCTGAATTATTCCGTCAAGTTGAGCCGGATGATTTAATGA
AATTCGGCTTGATTCCAGAATTTATTGGTCGTCTTCCAATGATTGCGCCATTAAGCGAATTAGATGAAGAAGCGTTAATC
CAGATCCTTACTCAACCGAAAAATGCACTGACCAAACAATATCAAGCATTATTTGGCTTAGAAGATGTGGAACTTGAATT
CACGCCAGAAGCATTAAAAGCGATGGCGAAAAAAGCCCTTGAACGTAAAACTGGTGCGCGTGGTTTACGATCAATCGTTG
AGGCTGTATTGTTAGATACGATGTATGATTTACCTTCAATCGAAAACTTGCAAAAAGTGATTGTGGATGAAGAAACCATC
GTTGATAACAAACCACCAAAGCTCGAATATAAAAACTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-308)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(314-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.946

99.272

0.575
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.138

96.845

0.534

Multiple sequence alignment