Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | APJL_RS06335 | Genome accession | NC_010278 |
| Coordinates | 1413137..1413685 (-) | Length | 182 a.a. |
| NCBI ID | WP_012263163.1 | Uniprot ID | B0BQK5 |
| Organism | Actinobacillus pleuropneumoniae serovar 3 str. JL03 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1408137..1418685
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APJL_RS06320 (APJL_1281) | - | 1408621..1409142 (+) | 522 | WP_005598290.1 | SprT family zinc-dependent metalloprotease | - |
| APJL_RS06325 (APJL_1282) | - | 1409247..1410533 (+) | 1287 | WP_012263161.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| APJL_RS06330 (APJL_1283) | - | 1410723..1413062 (-) | 2340 | WP_012263162.1 | Tex family protein | - |
| APJL_RS06335 (APJL_1284) | pilF | 1413137..1413685 (-) | 549 | WP_012263163.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| APJL_RS06340 (APJL_1285) | - | 1413739..1414920 (-) | 1182 | WP_005608495.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| APJL_RS06365 (APJL_1286) | gltX | 1415825..1417264 (+) | 1440 | WP_005605060.1 | glutamate--tRNA ligase | - |
| APJL_RS06375 (APJL_1287) | yefM | 1417602..1417853 (+) | 252 | WP_005598318.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| APJL_RS06380 (APJL_1288) | - | 1417850..1418110 (+) | 261 | WP_005605064.1 | Txe/YoeB family addiction module toxin | - |
| APJL_RS06385 (APJL_1289) | - | 1418268..1418435 (-) | 168 | WP_009875287.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20654.32 Da Isoelectric Point: 6.9477
>NTDB_id=29837 APJL_RS06335 WP_012263163.1 1413137..1413685(-) (pilF) [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSNNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVQSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKARAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=29837 APJL_RS06335 WP_012263163.1 1413137..1413685(-) (pilF) [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATACCAACAATTTGAGCAAGCGG
TGCAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTAGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTACCTACCTCACTCCGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCACGCCGAGCAAGCTTATCAGCAAGCATTGAAGCTGAGTAATAACCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATACCAACAATTTGAGCAAGCGG
TGCAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTAGAAAATATCGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAAGCAAGAGCGGCGGCACTGCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
67.553 |
100 |
0.698 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.784 |
93.956 |
0.44 |