Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   A7J09_RS05630 Genome accession   NZ_CP030015
Coordinates   1168986..1170212 (+) Length   408 a.a.
NCBI ID   WP_029178312.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1163986..1175212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS05605 (A7J09_05695) - 1165103..1165438 (+) 336 WP_029178308.1 hypothetical protein -
  A7J09_RS05610 (A7J09_05700) - 1165532..1166491 (+) 960 WP_029178309.1 ROK family glucokinase -
  A7J09_RS05615 (A7J09_05715) - 1167261..1168100 (+) 840 WP_029178311.1 thymidylate synthase -
  A7J09_RS05620 (A7J09_05720) - 1168276..1168788 (+) 513 WP_014638913.1 dihydrofolate reductase -
  A7J09_RS05625 (A7J09_05725) - 1168791..1168964 (+) 174 WP_014638914.1 hypothetical protein -
  A7J09_RS05630 (A7J09_05730) clpX 1168986..1170212 (+) 1227 WP_029178312.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  A7J09_RS05635 (A7J09_05735) yihA 1170268..1170855 (+) 588 WP_024406326.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  A7J09_RS05640 (A7J09_05740) ndk 1170878..1171280 (+) 403 Protein_1079 nucleoside-diphosphate kinase -
  A7J09_RS05645 (A7J09_05745) - 1171315..1172570 (-) 1256 Protein_1080 ISL3 family transposase -
  A7J09_RS05650 (A7J09_05750) - 1172749..1174101 (-) 1353 WP_029943010.1 IS66-like element short variant transposase -
  A7J09_RS05655 (A7J09_05755) - 1174055..1174261 (-) 207 WP_029178852.1 transposase -
  A7J09_RS05660 (A7J09_05760) tnpB 1174312..1174662 (-) 351 WP_029188189.1 IS66 family insertion sequence element accessory protein TnpB -
  A7J09_RS05665 (A7J09_05765) - 1174643..1174828 (-) 186 WP_029188188.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45334.82 Da        Isoelectric Point: 4.6382

>NTDB_id=298260 A7J09_RS05630 WP_029178312.1 1168986..1170212(+) (clpX) [Streptococcus suis strain ISU2812]
MAVKHTHEFIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGHNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTTEDLVRIL
TEPKNALVKQYQTLLSYDDVELDFDEDALLAIAEKAIERKTGARGLRSIIEETILDVMFEVPGQDNVKRVRVTKAAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=298260 A7J09_RS05630 WP_029178312.1 1168986..1170212(+) (clpX) [Streptococcus suis strain ISU2812]
ATGGCTGTTAAGCATACACATGAGTTTATTTATTGCTCATTTTGTGGAAAAAATCAAGAAGAAGTAAAAAAAATTATCGC
AGGGAACAATGTCTTCATTTGTAATGAGTGCGTGGAACTAGCACAGGAAATCATTCGTGAGGAACTGGCAGAAGAAGTTT
TGACAGACTTGGCCGACACGCCAAAGCCACAAGAATTGCTCAATATTTTAAACAATTATGTCATTGGGCAAGACCGTGCA
AAGCGTGCCTTGGCAGTAGCTGTTTACAACCACTACAAGCGCATCAATTTCCAAGATAGCCGTGATGAGAACGATGTTGA
TTTGCAAAAATCAAATATCCTCATGATTGGCCCGACTGGTTCTGGTAAGACTTTCTTGGCTCAAACCTTGGCCAAAAGTT
TGAATGTACCATTCGCCATTGCAGATGCGACAGCACTAACTGAGGCTGGTTACGTTGGTGAAGACGTGGAAAATATCCTT
CTCAAACTTTTGCAGGCTGCAGACTTTAACATCGACCGTGCAGAAAGAGGAATTATCTATGTGGATGAAATTGATAAGAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGCGATGTATCTGGTGAGGGTGTCCAGCAAGCTCTCCTAAAAATTATCG
AGGGAACTGTGGCCAGCGTACCACCACAAGGCGGACGCAAACATCCAAACCAAGAAATGATTCACGTGGACACCAAAAAT
ATCCTGTTTATCGTTGGCGGTGCATTTGATGGTATCGAAGAAATCGTCAAACAGCGTCTCGGTGAAAAAATCATCGGTTT
TGGTCATAATAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCAGACGATATTCAAAAATTCGGTA
TCATTCCAGAGTTGATTGGTCGCTTGCCTGTATTTGCAGCTTTGGACCAATTGACAACAGAGGATTTGGTACGCATTTTG
ACGGAACCGAAGAATGCTCTTGTAAAACAATACCAGACACTCTTGTCTTATGATGACGTGGAGCTTGACTTTGATGAGGA
CGCCTTGTTAGCAATTGCAGAAAAAGCAATTGAACGTAAGACTGGTGCTCGTGGACTTCGCTCCATCATTGAAGAAACGA
TATTGGATGTCATGTTTGAGGTGCCAGGCCAAGATAACGTTAAACGCGTTCGTGTAACAAAAGCAGCAGTAGACGGTAAA
GAAAAGCCTTTACTAGAAACTGCATAA

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

82.885

100

0.831
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.96

98.529

0.571

Multiple sequence alignment