Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ERL60_RS09140 Genome accession   NZ_CP035312
Coordinates   1890346..1891002 (+) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain D72     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1885346..1896002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERL60_RS09110 (ERL60_09115) dcyD 1886225..1887211 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  ERL60_RS09115 (ERL60_09120) tcyL 1887226..1887894 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ERL60_RS09120 (ERL60_09125) tcyN 1887891..1888643 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ERL60_RS09125 (ERL60_09130) sdiA 1888873..1889595 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  ERL60_RS09130 (ERL60_09135) yecF 1889663..1889887 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ERL60_RS09135 (ERL60_09140) yecU 1889874..1890050 (-) 177 WP_001307856.1 protein YecU -
  ERL60_RS09140 (ERL60_09145) letA 1890346..1891002 (+) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ERL60_RS09145 (ERL60_09150) uvrC 1890999..1892831 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ERL60_RS09150 (ERL60_09155) pgsA 1892888..1893436 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ERL60_RS09170 (ERL60_09175) yecA 1894086..1894751 (+) 666 WP_000847880.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=298239 ERL60_RS09140 WP_000611338.1 1890346..1891002(+) (letA) [Escherichia coli strain D72]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=298239 ERL60_RS09140 WP_000611338.1 1890346..1891002(+) (letA) [Escherichia coli strain D72]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491