Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ESP48_RS08260 Genome accession   NZ_CP035306
Coordinates   1533809..1534405 (+) Length   198 a.a.
NCBI ID   WP_011680928.1    Uniprot ID   Q03LJ7
Organism   Streptococcus thermophilus strain IDCC2201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1528809..1539405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ESP48_RS08235 (ESP48_08235) - 1528944..1529156 (+) 213 WP_011680924.1 alpha/beta fold hydrolase -
  ESP48_RS08240 (ESP48_08240) - 1529404..1529595 (+) 192 WP_011227003.1 alpha/beta fold hydrolase -
  ESP48_RS08245 (ESP48_08245) - 1529769..1530623 (+) 855 WP_024009803.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  ESP48_RS08250 (ESP48_08250) - 1530627..1531463 (+) 837 WP_014608120.1 NAD(P)H-hydrate dehydratase -
  ESP48_RS08255 (ESP48_08255) pbp2b 1531585..1533699 (+) 2115 WP_064355489.1 penicillin-binding protein PBP2B -
  ESP48_RS08260 (ESP48_08260) recR 1533809..1534405 (+) 597 WP_011680928.1 recombination mediator RecR Machinery gene
  ESP48_RS10290 licT 1534507..1535347 (+) 841 Protein_1525 BglG family transcription antiterminator LicT -
  ESP48_RS08285 (ESP48_08285) ybeY 1535566..1536063 (+) 498 WP_064355491.1 rRNA maturation RNase YbeY -
  ESP48_RS08290 (ESP48_08290) - 1536044..1536448 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  ESP48_RS08295 (ESP48_08295) era 1536467..1537366 (+) 900 WP_002950226.1 GTPase Era -
  ESP48_RS08300 (ESP48_08300) mutM 1537413..1538234 (+) 822 WP_024009805.1 DNA-formamidopyrimidine glycosylase -
  ESP48_RS08305 (ESP48_08305) coaE 1538231..1538824 (+) 594 WP_041827324.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21737.95 Da        Isoelectric Point: 4.5326

>NTDB_id=298192 ESP48_RS08260 WP_011680928.1 1533809..1534405(+) (recR) [Streptococcus thermophilus strain IDCC2201]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLIARLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=298192 ESP48_RS08260 WP_011680928.1 1533809..1534405(+) (recR) [Streptococcus thermophilus strain IDCC2201]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTGCCCGTCTTATGGATA
GTGAGGTTGACGAGGTTATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTT
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03LJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment