Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DM480_RS06290 | Genome accession | NZ_CP029985 |
| Coordinates | 1298188..1298778 (+) | Length | 196 a.a. |
| NCBI ID | WP_115378076.1 | Uniprot ID | A0A345WNC6 |
| Organism | Sphingomonas sp. FARSPH | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1293188..1303778
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DM480_RS06270 (DM480_06270) | - | 1294239..1295222 (+) | 984 | WP_115378072.1 | DMT family transporter | - |
| DM480_RS06275 (DM480_06275) | - | 1295219..1295872 (+) | 654 | WP_115378073.1 | COQ9 family protein | - |
| DM480_RS06280 (DM480_06280) | - | 1296050..1296310 (+) | 261 | WP_232834142.1 | FeoA family protein | - |
| DM480_RS06285 (DM480_06285) | - | 1296313..1298178 (+) | 1866 | WP_115378075.1 | ferrous iron transporter B | - |
| DM480_RS06290 (DM480_06290) | ssb | 1298188..1298778 (+) | 591 | WP_115378076.1 | single-stranded DNA-binding protein | Machinery gene |
| DM480_RS06295 (DM480_06295) | - | 1298781..1300322 (+) | 1542 | WP_232834143.1 | PAS domain-containing protein | - |
| DM480_RS06300 (DM480_06300) | - | 1300309..1300713 (-) | 405 | WP_198665909.1 | response regulator | - |
| DM480_RS06305 (DM480_06305) | metW | 1300786..1301385 (-) | 600 | WP_115378079.1 | methionine biosynthesis protein MetW | - |
| DM480_RS06310 (DM480_06310) | - | 1301382..1302515 (-) | 1134 | WP_115378080.1 | homoserine O-acetyltransferase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 19921.48 Da Isoelectric Point: 5.0179
>NTDB_id=298079 DM480_RS06290 WP_115378076.1 1298188..1298778(+) (ssb) [Sphingomonas sp. FARSPH]
MAGSVNKVILVGNLGRDPESRTFQNGGKVVNLRIATSESWKDRNTGERKEKTEWHSVAIFNEGLANVAERFLRKGSKVYI
EGQLQTRKWQDQQGNDKYSTEVVLQGFNSVLTMLDGPGGGGGQGGGSRSGGGDEWGGGDDFGGGAAGSYGGGGGNRGGGG
FGGGQSGGNRGGGNAGGFGGGQPGGFADDLDDDVPF
MAGSVNKVILVGNLGRDPESRTFQNGGKVVNLRIATSESWKDRNTGERKEKTEWHSVAIFNEGLANVAERFLRKGSKVYI
EGQLQTRKWQDQQGNDKYSTEVVLQGFNSVLTMLDGPGGGGGQGGGSRSGGGDEWGGGDDFGGGAAGSYGGGGGNRGGGG
FGGGQSGGNRGGGNAGGFGGGQPGGFADDLDDDVPF
Nucleotide
Download Length: 591 bp
>NTDB_id=298079 DM480_RS06290 WP_115378076.1 1298188..1298778(+) (ssb) [Sphingomonas sp. FARSPH]
ATGGCAGGCAGCGTCAACAAGGTCATTCTCGTCGGCAACCTGGGGCGCGACCCCGAGTCGCGCACGTTCCAGAACGGCGG
CAAGGTGGTGAACCTGCGCATCGCGACGTCCGAATCGTGGAAGGACCGCAACACCGGCGAGCGCAAGGAAAAGACCGAAT
GGCATTCGGTCGCGATTTTCAACGAAGGCCTCGCCAACGTCGCCGAACGCTTTCTGCGCAAGGGGTCGAAAGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGATCAGCAGGGCAACGACAAATATTCGACCGAGGTCGTGCTGCAGGGTTT
CAACTCCGTGCTGACTATGCTCGACGGGCCCGGCGGCGGTGGCGGCCAGGGCGGCGGCAGCCGTAGCGGCGGCGGCGACG
AATGGGGTGGCGGTGACGATTTCGGCGGCGGCGCCGCGGGCAGCTATGGCGGTGGCGGTGGCAACCGCGGCGGTGGCGGC
TTCGGCGGCGGCCAGTCGGGCGGTAACCGGGGTGGCGGCAATGCCGGTGGCTTCGGCGGTGGTCAGCCGGGTGGCTTCGC
CGACGATCTCGACGACGACGTACCGTTCTGA
ATGGCAGGCAGCGTCAACAAGGTCATTCTCGTCGGCAACCTGGGGCGCGACCCCGAGTCGCGCACGTTCCAGAACGGCGG
CAAGGTGGTGAACCTGCGCATCGCGACGTCCGAATCGTGGAAGGACCGCAACACCGGCGAGCGCAAGGAAAAGACCGAAT
GGCATTCGGTCGCGATTTTCAACGAAGGCCTCGCCAACGTCGCCGAACGCTTTCTGCGCAAGGGGTCGAAAGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGATCAGCAGGGCAACGACAAATATTCGACCGAGGTCGTGCTGCAGGGTTT
CAACTCCGTGCTGACTATGCTCGACGGGCCCGGCGGCGGTGGCGGCCAGGGCGGCGGCAGCCGTAGCGGCGGCGGCGACG
AATGGGGTGGCGGTGACGATTTCGGCGGCGGCGCCGCGGGCAGCTATGGCGGTGGCGGTGGCAACCGCGGCGGTGGCGGC
TTCGGCGGCGGCCAGTCGGGCGGTAACCGGGGTGGCGGCAATGCCGGTGGCTTCGGCGGTGGTCAGCCGGGTGGCTTCGC
CGACGATCTCGACGACGACGTACCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
48.039 |
100 |
0.5 |
| ssb | Vibrio cholerae strain A1552 |
62.992 |
64.796 |
0.408 |