Detailed information NTG0297975

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EQH16_RS10965
• Genome accession: NZ_CP035264
• Coordinates: 2104818..2105915 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266660.1
• Uniprot ID: Q97N44
• Organism: Streptococcus pneumoniae strain TVO_1901921
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2099818..2110915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH16_RS10940 (EQH16_11475)	pgsA	2100339..2100884 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EQH16_RS10945 (EQH16_11480)	rodZ	2100895..2101716 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
EQH16_RS10950 (EQH16_11485)	yfmH	2101758..2103041 (-)	1284	WP_000170192.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EQH16_RS10955 (EQH16_11490)	yfmF	2103038..2104288 (-)	1251	WP_000424272.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
EQH16_RS10960 (EQH16_11495)	yaaA	2104447..2104815 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
EQH16_RS10965 (EQH16_11500)	recF	2104818..2105915 (+)	1098	WP_000266660.1	DNA replication/repair protein RecF	Machinery gene
EQH16_RS10970 (EQH16_11505)	guaB	2105966..2107444 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
EQH16_RS10975 (EQH16_11510)	trpS	2107596..2108621 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
EQH16_RS10980 (EQH16_11515)	-	2108827..2110449 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41900.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=297975 EQH16_RS10965 WP_000266660.1 2104818..2105915(+) (recF) [Streptococcus pneumoniae strain TVO_1901921]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=297975 EQH16_RS10965 WP_000266660.1 2104818..2105915(+) (recF) [Streptococcus pneumoniae strain TVO_1901921]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q97N44

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46