Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   C0W45_RS03600 Genome accession   NZ_CP029966
Coordinates   687783..688784 (+) Length   333 a.a.
NCBI ID   WP_004270906.1    Uniprot ID   A0A1B2A6B9
Organism   Latilactobacillus curvatus strain ZJUNIT8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 682783..693784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0W45_RS03560 (C0W45_03560) - 682959..683972 (+) 1014 WP_004265264.1 YeiH family protein -
  C0W45_RS03565 (C0W45_03565) - 684063..684302 (-) 240 WP_004270892.1 cytochrome b5 domain-containing protein -
  C0W45_RS03570 (C0W45_03570) - 684497..684832 (+) 336 WP_111447552.1 hypothetical protein -
  C0W45_RS03580 (C0W45_03580) - 685013..685390 (-) 378 WP_111447553.1 hypothetical protein -
  C0W45_RS03585 (C0W45_03585) - 685493..685993 (+) 501 WP_111447554.1 VanZ family protein -
  C0W45_RS03590 (C0W45_03590) - 686083..686814 (+) 732 WP_004270897.1 YebC/PmpR family DNA-binding transcriptional regulator -
  C0W45_RS03595 (C0W45_03595) comGA 686918..687793 (+) 876 WP_111447555.1 competence type IV pilus ATPase ComGA Machinery gene
  C0W45_RS03600 (C0W45_03600) comGB 687783..688784 (+) 1002 WP_004270906.1 type II secretion system F family protein Machinery gene
  C0W45_RS03605 (C0W45_03605) comGC 688781..689089 (+) 309 WP_004270901.1 competence type IV pilus major pilin ComGC Machinery gene
  C0W45_RS03610 (C0W45_03610) - 689121..689513 (+) 393 WP_004270899.1 hypothetical protein -
  C0W45_RS10235 - 689578..689805 (+) 228 WP_162619227.1 hypothetical protein -
  C0W45_RS10615 - 689771..689854 (+) 84 Protein_686 type II secretion system protein -
  C0W45_RS03615 (C0W45_03615) - 689876..690256 (+) 381 WP_004270914.1 ComGF family competence protein -
  C0W45_RS03620 (C0W45_03620) - 690234..690557 (+) 324 WP_039099486.1 hypothetical protein -
  C0W45_RS03625 (C0W45_03625) - 690673..691692 (+) 1020 WP_307722871.1 class I SAM-dependent methyltransferase -
  C0W45_RS03630 (C0W45_03630) - 691714..692907 (+) 1194 WP_004270911.1 acetate/propionate family kinase -
  C0W45_RS03635 (C0W45_03635) - 692967..693419 (+) 453 WP_111447557.1 laaL -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37875.07 Da        Isoelectric Point: 9.6278

>NTDB_id=297958 C0W45_RS03600 WP_004270906.1 687783..688784(+) (comGB) [Latilactobacillus curvatus strain ZJUNIT8]
MKTKTTVQFNTEFMLLLGRLLQNGFSLQQALEFMPIVFPTQKQWLHQVQTGLEAGKRLAPSLAAVSFPTHLVAQIELTEL
QGNLGECLLHLGQLQRIQQKRRRELVGVIAYPCFLLLFLGALIGMMQIYLFPEIAQFNPTTSATSPLQLFFRVMGTFVIM
AGGLISVYLFRWHRRPLLQRLAAAFRWPFIGKTLQAYYQYCLLFDLATCLNNGLNLAEMHQLTHRLAKTSWLVQLMQQLE
TAVQKGGTLLANLADGVFYPPELQLVLAKGSPLQQMAKEVDLLAVIKYDELQRQLKQKVNWLQPLLFILIGIIIICTYLS
ILLPLYHTMEGIS

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=297958 C0W45_RS03600 WP_004270906.1 687783..688784(+) (comGB) [Latilactobacillus curvatus strain ZJUNIT8]
ATGAAGACTAAAACCACTGTTCAATTCAATACTGAATTTATGTTGCTGTTAGGGCGCTTACTGCAAAATGGTTTTTCTTT
ACAACAAGCGCTTGAGTTCATGCCGATTGTTTTTCCGACACAAAAGCAGTGGCTGCATCAGGTGCAAACTGGGTTAGAAG
CAGGAAAACGACTAGCACCAAGCTTAGCGGCGGTTTCGTTTCCAACACACCTTGTTGCACAGATTGAATTGACTGAGTTG
CAGGGAAACTTAGGCGAGTGTTTGTTACATCTTGGCCAATTACAGCGAATTCAACAGAAACGGCGTAGAGAGTTAGTTGG
CGTAATTGCCTATCCCTGTTTTCTACTCCTTTTTCTCGGGGCGTTGATTGGGATGATGCAGATTTATCTTTTTCCGGAAA
TCGCGCAGTTTAACCCAACAACTTCGGCGACATCACCATTACAACTATTTTTTAGAGTGATGGGGACATTCGTTATTATG
GCTGGTGGTCTGATTAGTGTGTATTTATTCCGTTGGCATCGGCGACCGCTATTACAACGATTGGCGGCGGCATTTAGATG
GCCGTTCATCGGTAAAACGTTGCAGGCTTACTATCAGTATTGCTTATTATTTGATTTAGCGACTTGCCTGAATAACGGCT
TAAACTTGGCCGAAATGCATCAGCTTACACATCGTTTGGCGAAAACATCGTGGCTTGTACAATTAATGCAACAACTTGAA
ACGGCTGTCCAAAAGGGGGGCACGCTATTAGCGAACTTAGCGGATGGCGTTTTTTATCCACCTGAGCTGCAATTAGTGCT
CGCTAAGGGAAGTCCGTTACAACAGATGGCCAAGGAGGTTGATCTGCTTGCAGTCATTAAATACGATGAACTGCAACGGC
AATTGAAACAGAAGGTGAATTGGCTACAACCGCTCTTGTTTATCCTAATTGGGATCATCATTATTTGTACCTATCTCAGT
ATTTTATTACCGCTATATCATACAATGGAGGGAATTTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(13-132)

Type II secretion system (T2SS), protein F (T2SSF)

(205-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2A6B9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Latilactobacillus sakei subsp. sakei 23K

57.27

100

0.58

Multiple sequence alignment