Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EQH16_RS08015 Genome accession   NZ_CP035264
Coordinates   1561950..1562546 (-) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae strain TVO_1901921     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1556950..1567546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH16_RS07995 (EQH16_08395) - 1557881..1558585 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  EQH16_RS08000 (EQH16_08400) - 1558676..1559287 (-) 612 WP_000857982.1 NUDIX hydrolase -
  EQH16_RS08005 (EQH16_08405) murF 1559274..1560647 (-) 1374 WP_000778715.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  EQH16_RS08010 (EQH16_08410) - 1560731..1561774 (-) 1044 WP_000814653.1 D-alanine--D-alanine ligase -
  EQH16_RS08015 (EQH16_08415) recR 1561950..1562546 (-) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  EQH16_RS08020 (EQH16_08420) pbp2b 1562557..1564614 (-) 2058 WP_078152381.1 penicillin-binding protein 2B -
  EQH16_RS08025 (EQH16_08425) - 1564814..1565665 (+) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  EQH16_RS08030 (EQH16_08430) - 1565681..1566565 (-) 885 WP_000222985.1 ROK family protein -
  EQH16_RS08035 (EQH16_08435) - 1566583..1567500 (-) 918 WP_001281496.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=297932 EQH16_RS08015 WP_000966743.1 1561950..1562546(-) (recR) [Streptococcus pneumoniae strain TVO_1901921]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=297932 EQH16_RS08015 WP_000966743.1 1561950..1562546(-) (recR) [Streptococcus pneumoniae strain TVO_1901921]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCCATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485