Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BCERKBAB4_RS07740 Genome accession   NC_010184
Coordinates   1523404..1524006 (-) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides KBAB4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1518404..1529006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCERKBAB4_RS07720 (BcerKBAB4_1471) dnaD 1518674..1519381 (+) 708 WP_012260639.1 DNA replication protein DnaD -
  BCERKBAB4_RS07725 (BcerKBAB4_1472) nth 1519397..1520044 (+) 648 WP_002030794.1 endonuclease III -
  BCERKBAB4_RS07730 (BcerKBAB4_1473) - 1520048..1520566 (+) 519 WP_002030796.1 YpoC family protein -
  BCERKBAB4_RS07735 (BcerKBAB4_1474) - 1520593..1523337 (-) 2745 WP_012260640.1 PBP1A family penicillin-binding protein -
  BCERKBAB4_RS07740 (BcerKBAB4_1475) recU 1523404..1524006 (-) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  BCERKBAB4_RS07745 (BcerKBAB4_1476) - 1524110..1525135 (+) 1026 WP_012260641.1 DUF2515 domain-containing protein -
  BCERKBAB4_RS32850 - 1525479..1525625 (-) 147 WP_307838604.1 phage portal protein -
  BCERKBAB4_RS07750 (BcerKBAB4_1477) - 1525744..1525986 (+) 243 WP_002011865.1 hypothetical protein -
  BCERKBAB4_RS07755 (BcerKBAB4_1478) - 1526002..1526346 (+) 345 WP_002011864.1 YppE family protein -
  BCERKBAB4_RS07760 (BcerKBAB4_1479) - 1526372..1526563 (-) 192 WP_012260642.1 YppF family protein -
  BCERKBAB4_RS07765 (BcerKBAB4_1480) - 1526741..1527370 (+) 630 WP_012260643.1 YppG family protein -
  BCERKBAB4_RS07770 (BcerKBAB4_1481) - 1527527..1527964 (+) 438 WP_002189016.1 CotD family spore coat protein -
  BCERKBAB4_RS07775 (BcerKBAB4_1482) - 1528021..1528575 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=29790 BCERKBAB4_RS07740 WP_002030800.1 1523404..1524006(-) (recU) [Bacillus mycoides KBAB4]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=29790 BCERKBAB4_RS07740 WP_002030800.1 1523404..1524006(-) (recU) [Bacillus mycoides KBAB4]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCACCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment