Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH17_RS02330 Genome accession   NZ_CP035263
Coordinates   473928..474977 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901922     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 468928..479977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH17_RS02300 - 469763..470396 (+) 634 Protein_460 DJ-1/PfpI family protein -
  EQH17_RS02305 (EQH17_02495) dnaJ 470566..471702 (+) 1137 WP_001066288.1 molecular chaperone DnaJ -
  EQH17_RS02310 - 472024..472263 (-) 240 WP_001813906.1 hypothetical protein -
  EQH17_RS02315 (EQH17_02505) - 472425..472712 (-) 288 WP_000777760.1 hypothetical protein -
  EQH17_RS02320 (EQH17_02510) - 472722..473132 (-) 411 WP_001278301.1 HIT family protein -
  EQH17_RS02325 (EQH17_02515) pptA 473200..473931 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH17_RS02330 (EQH17_02520) pptB 473928..474977 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  EQH17_RS02335 (EQH17_02525) - 475145..475474 (-) 330 WP_000132572.1 hypothetical protein -
  EQH17_RS02340 (EQH17_02530) - 475751..476089 (+) 339 WP_000682132.1 LytTR family DNA-binding domain-containing protein -
  EQH17_RS02345 (EQH17_02535) comE/blpR 476094..476831 (+) 738 WP_001219146.1 response regulator transcription factor Regulator
  EQH17_RS02350 (EQH17_02540) - 476845..478185 (+) 1341 WP_001099895.1 sensor histidine kinase -
  EQH17_RS02355 (EQH17_02545) blpC 478230..478385 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  EQH17_RS02360 (EQH17_02550) - 478442..479803 (-) 1362 WP_001069098.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=297765 EQH17_RS02330 WP_000653771.1 473928..474977(+) (pptB) [Streptococcus pneumoniae strain TVO_1901922]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=297765 EQH17_RS02330 WP_000653771.1 473928..474977(+) (pptB) [Streptococcus pneumoniae strain TVO_1901922]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACTCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGG
CTGGACTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47