Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH18_RS02360 Genome accession   NZ_CP035262
Coordinates   472720..473769 (+) Length   349 a.a.
NCBI ID   WP_000653779.1    Uniprot ID   A0A0H2UNU6
Organism   Streptococcus pneumoniae strain TVO_1901923     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 467720..478769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH18_RS02335 - 468551..469184 (+) 634 Protein_468 DJ-1/PfpI family protein -
  EQH18_RS02340 (EQH18_02490) dnaJ 469391..470527 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  EQH18_RS02345 (EQH18_02500) - 471217..471504 (-) 288 WP_000777760.1 hypothetical protein -
  EQH18_RS02350 (EQH18_02505) - 471514..471924 (-) 411 WP_001278301.1 HIT family protein -
  EQH18_RS02355 (EQH18_02510) pptA 471992..472723 (+) 732 WP_000889924.1 ABC transporter ATP-binding protein Regulator
  EQH18_RS02360 (EQH18_02515) pptB 472720..473769 (+) 1050 WP_000653779.1 ABC transporter permease Regulator
  EQH18_RS02365 (EQH18_02520) - 473937..474266 (-) 330 WP_000132572.1 hypothetical protein -
  EQH18_RS02370 (EQH18_02525) - 474543..474881 (+) 339 WP_000682132.1 LytTR family DNA-binding domain-containing protein -
  EQH18_RS02375 (EQH18_02530) comE/blpR 474886..475623 (+) 738 WP_001219146.1 response regulator transcription factor Regulator
  EQH18_RS02380 (EQH18_02535) - 475637..476977 (+) 1341 WP_001099895.1 sensor histidine kinase -
  EQH18_RS02385 (EQH18_02540) blpC 477022..477177 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  EQH18_RS02390 (EQH18_02545) - 477234..478595 (-) 1362 WP_061375123.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40505.54 Da        Isoelectric Point: 9.8750

>NTDB_id=297649 EQH18_RS02360 WP_000653779.1 472720..473769(+) (pptB) [Streptococcus pneumoniae strain TVO_1901923]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGTATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFCQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=297649 EQH18_RS02360 WP_000653779.1 472720..473769(+) (pptB) [Streptococcus pneumoniae strain TVO_1901923]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAACTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTTGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATTTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTGCTTTCC
TTGCTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2UNU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment