Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH20_RS02290 Genome accession   NZ_CP035260
Coordinates   466746..467795 (+) Length   349 a.a.
NCBI ID   WP_061476401.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901925     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 461746..472795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH20_RS02265 - 462626..463259 (+) 634 Protein_449 DJ-1/PfpI family protein -
  EQH20_RS02270 (EQH20_02405) dnaJ 463429..464565 (+) 1137 WP_001066288.1 molecular chaperone DnaJ -
  EQH20_RS02275 (EQH20_02415) - 465243..465530 (-) 288 WP_000777760.1 hypothetical protein -
  EQH20_RS02280 (EQH20_02420) - 465540..465950 (-) 411 WP_001278301.1 HIT family protein -
  EQH20_RS02285 (EQH20_02425) pptA 466018..466749 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH20_RS02290 (EQH20_02430) pptB 466746..467795 (+) 1050 WP_061476401.1 ABC transporter permease Regulator
  EQH20_RS02295 (EQH20_02440) - 467963..468292 (-) 330 WP_000132572.1 hypothetical protein -
  EQH20_RS02300 (EQH20_02445) - 468568..468906 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  EQH20_RS02305 (EQH20_02450) comE/blpR 468911..469648 (+) 738 WP_061476395.1 response regulator transcription factor Regulator
  EQH20_RS02310 (EQH20_02455) - 469662..471002 (+) 1341 WP_061647476.1 sensor histidine kinase -
  EQH20_RS02315 (EQH20_02460) blpC 471047..471202 (-) 156 WP_000358810.1 quorum-sensing system pheromone BlpC -
  EQH20_RS02320 (EQH20_02465) - 471259..472620 (-) 1362 WP_054369799.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40560.61 Da        Isoelectric Point: 10.0602

>NTDB_id=297415 EQH20_RS02290 WP_061476401.1 466746..467795(+) (pptB) [Streptococcus pneumoniae strain TVO_1901925]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVEVVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRRMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=297415 EQH20_RS02290 WP_061476401.1 466746..467795(+) (pptB) [Streptococcus pneumoniae strain TVO_1901925]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGCCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTATTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTTCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGG
CTGGACTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
AAAGGGAATTTCAAACAGTGTCAAACGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGTCTGGAAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAAGTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCGGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.839

99.427

0.476

  pptB Streptococcus thermophilus LMD-9

46.974

99.427

0.467