Detailed information NTG0297148

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EQH23_RS10940
• Genome accession: NZ_CP035257
• Coordinates: 2143079..2144176 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266661.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain TVO_1901928
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2138079..2149176

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH23_RS10915 (EQH23_11575)	pgsA	2138600..2139145 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EQH23_RS10920 (EQH23_11580)	rodZ	2139156..2139977 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
EQH23_RS10925 (EQH23_11585)	yfmH	2140019..2141302 (-)	1284	WP_000170191.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EQH23_RS10930 (EQH23_11590)	yfmF	2141299..2142549 (-)	1251	WP_000424269.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
EQH23_RS10935 (EQH23_11595)	-	2142708..2143076 (+)	369	WP_000455898.1	RNA-binding S4 domain-containing protein	-
EQH23_RS10940 (EQH23_11600)	recF	2143079..2144176 (+)	1098	WP_000266661.1	DNA replication/repair protein RecF	Machinery gene
EQH23_RS10945 (EQH23_11605)	guaB	2144227..2145705 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
EQH23_RS10950 (EQH23_11610)	trpS	2145857..2146882 (-)	1026	WP_000165446.1	tryptophan--tRNA ligase	-
EQH23_RS10955 (EQH23_11615)	-	2147088..2148710 (+)	1623	WP_061705251.1	ABC-F family ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41999.13 Da
• Isoelectric Point: 9.3081

>NTDB_id=297148 EQH23_RS10940 WP_000266661.1 2143079..2144176(+) (recF) [Streptococcus pneumoniae strain TVO_1901928]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNRN

Nucleotide

• Length: 1098 bp

>NTDB_id=297148 EQH23_RS10940 WP_000266661.1 2143079..2144176(+) (recF) [Streptococcus pneumoniae strain TVO_1901928]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATAGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.452	100	0.995
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46