Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQH23_RS00350 Genome accession   NZ_CP035257
Coordinates   63141..63911 (+) Length   256 a.a.
NCBI ID   WP_000616167.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901928     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58141..68911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH23_RS00330 (EQH23_00335) - 59881..60318 (+) 438 WP_000076479.1 CoA-binding protein -
  EQH23_RS00335 - 60359..60787 (+) 429 WP_000693127.1 hypothetical protein -
  EQH23_RS00340 (EQH23_00340) - 60816..61826 (-) 1011 WP_000009158.1 YeiH family protein -
  EQH23_RS00345 (EQH23_00345) - 61975..63144 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  EQH23_RS00350 (EQH23_00350) recO 63141..63911 (+) 771 WP_000616167.1 DNA repair protein RecO Machinery gene
  EQH23_RS00355 (EQH23_00355) plsX 63908..64900 (+) 993 WP_000717453.1 phosphate acyltransferase PlsX -
  EQH23_RS00360 (EQH23_00360) - 64906..65139 (+) 234 WP_000136447.1 acyl carrier protein -
  EQH23_RS00365 (EQH23_00365) - 65176..65475 (+) 300 Protein_66 transposase family protein -
  EQH23_RS00370 (EQH23_00370) blpU 65678..65908 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  EQH23_RS11030 - 65911..66036 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  EQH23_RS00375 (EQH23_00375) - 66447..66641 (+) 195 WP_000756776.1 hypothetical protein -
  EQH23_RS00380 (EQH23_00380) comR 66662..67555 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  EQH23_RS00385 (EQH23_00385) - 68098..68394 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.8959

>NTDB_id=297035 EQH23_RS00350 WP_000616167.1 63141..63911(+) (recO) [Streptococcus pneumoniae strain TVO_1901928]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQNLTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=297035 EQH23_RS00350 WP_000616167.1 63141..63911(+) (recO) [Streptococcus pneumoniae strain TVO_1901928]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAAATTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988