Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH24_RS02750 Genome accession   NZ_CP035256
Coordinates   532895..533944 (+) Length   349 a.a.
NCBI ID   WP_023396177.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901930     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 527895..538944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH24_RS02725 (EQH24_02880) - 529176..529532 (+) 357 WP_000114422.1 hypothetical protein -
  EQH24_RS02730 (EQH24_02885) dnaJ 529934..531070 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  EQH24_RS02735 (EQH24_02890) - 531392..531679 (-) 288 WP_000777760.1 hypothetical protein -
  EQH24_RS02740 (EQH24_02895) - 531689..532099 (-) 411 WP_001278301.1 HIT family protein -
  EQH24_RS02745 (EQH24_02900) pptA 532167..532898 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  EQH24_RS02750 (EQH24_02905) pptB 532895..533944 (+) 1050 WP_023396177.1 ABC transporter permease Regulator
  EQH24_RS02755 (EQH24_02915) - 534112..534441 (-) 330 WP_000132572.1 hypothetical protein -
  EQH24_RS02760 (EQH24_02920) - 534717..535055 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  EQH24_RS02765 (EQH24_02925) comE/blpR 535060..535797 (+) 738 WP_023396586.1 response regulator transcription factor Regulator
  EQH24_RS02770 (EQH24_02930) - 535811..537151 (+) 1341 WP_001028044.1 sensor histidine kinase -
  EQH24_RS02775 (EQH24_02935) blpC 537193..537348 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  EQH24_RS02780 (EQH24_02940) - 537405..538766 (-) 1362 Protein_555 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40547.62 Da        Isoelectric Point: 9.8750

>NTDB_id=296929 EQH24_RS02750 WP_023396177.1 532895..533944(+) (pptB) [Streptococcus pneumoniae strain TVO_1901930]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFCQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNSDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=296929 EQH24_RS02750 WP_023396177.1 532895..533944(+) (pptB) [Streptococcus pneumoniae strain TVO_1901930]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTCGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTTGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATTTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATAGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467