Detailed information NTG0296896

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EQH26_RS10720
• Genome accession: NZ_CP035254
• Coordinates: 2101495..2102592 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266666.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain TVO_1901932
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2096495..2107592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH26_RS10695 (EQH26_11235)	pgsA	2097016..2097561 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EQH26_RS10700 (EQH26_11240)	rodZ	2097572..2098393 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
EQH26_RS10705 (EQH26_11245)	yfmH	2098435..2099718 (-)	1284	WP_000170195.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EQH26_RS10710 (EQH26_11250)	yfmF	2099715..2100965 (-)	1251	WP_000424252.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
EQH26_RS10715 (EQH26_11255)	yaaA	2101124..2101492 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
EQH26_RS10720 (EQH26_11260)	recF	2101495..2102592 (+)	1098	WP_000266666.1	DNA replication/repair protein RecF	Machinery gene
EQH26_RS10725 (EQH26_11265)	tnpA	2102772..2103245 (+)	474	WP_001206386.1	IS200/IS605-like element ISSpn6 family transposase	-
EQH26_RS10730 (EQH26_11270)	guaB	2103379..2104857 (-)	1479	WP_000073424.1	IMP dehydrogenase	-
EQH26_RS10735 (EQH26_11275)	trpS	2105009..2106034 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41915.99 Da
• Isoelectric Point: 8.6711

>NTDB_id=296896 EQH26_RS10720 WP_000266666.1 2101495..2102592(+) (recF) [Streptococcus pneumoniae strain TVO_1901932]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSKSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=296896 EQH26_RS10720 WP_000266666.1 2101495..2102592(+) (recF) [Streptococcus pneumoniae strain TVO_1901932]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAAATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAA
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTACC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.178	100	0.992
recF	Bacillus subtilis subsp. subtilis str. 168	45.628	100	0.458