Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SUB_RS06290 Genome accession   NC_012004
Coordinates   1246408..1247004 (-) Length   198 a.a.
NCBI ID   WP_012658733.1    Uniprot ID   B9DUS1
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1241408..1252004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS06270 (SUB1254) - 1242201..1242896 (-) 696 WP_012658729.1 TIGR02206 family membrane protein -
  SUB_RS06275 (SUB1255) - 1242989..1244359 (-) 1371 WP_012658730.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SUB_RS06280 (SUB1256) - 1244627..1245184 (+) 558 WP_012658731.1 folate family ECF transporter S component -
  SUB_RS06285 (SUB1257) - 1245224..1246270 (-) 1047 WP_012658732.1 D-alanine--D-alanine ligase -
  SUB_RS06290 (SUB1258) recR 1246408..1247004 (-) 597 WP_012658733.1 recombination mediator RecR Machinery gene
  SUB_RS06295 (SUB1259) pbp2b 1247016..1249088 (-) 2073 WP_046388179.1 penicillin-binding protein PBP2B -
  SUB_RS06300 (SUB1260) - 1249177..1249953 (-) 777 WP_012658734.1 formate/nitrite transporter family protein -
  SUB_RS06305 (SUB1261) - 1250048..1250593 (-) 546 WP_012658735.1 hypothetical protein -
  SUB_RS06310 (SUB1262) - 1250659..1251177 (-) 519 WP_012658736.1 transcription repressor NadR -
  SUB_RS06315 (SUB1263) - 1251279..1251971 (-) 693 WP_012658737.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21654.79 Da        Isoelectric Point: 4.5782

>NTDB_id=29688 SUB_RS06290 WP_012658733.1 1246408..1247004(-) (recR) [Streptococcus uberis 0140J]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDEDVNDFAKNLLAAKRELTYCSVCGNLTDEDPCSICTDPSRDKS
MILVVEDSKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKTLITRLMDSDVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=29688 SUB_RS06290 WP_012658733.1 1246408..1247004(-) (recR) [Streptococcus uberis 0140J]
GTGTTATATCCAACACCAATAGCAAAACTTATTGATTCTTATTCAAAATTACCAGGAATTGGCATTAAAACGGCAACTCG
ATTAGCCTTCTATACAATCGGTATGAGTGATGAAGATGTTAATGACTTTGCCAAAAATTTATTGGCAGCCAAAAGAGAAC
TCACTTATTGCTCAGTGTGCGGAAATTTAACAGATGAGGATCCATGTTCCATTTGTACCGACCCTAGTCGAGATAAGAGC
ATGATATTGGTGGTTGAAGATTCAAAAGATGTTTCAGCCATGGAGAAGATACAGGAGTATCACGGCTATTATCATGTCTT
ACATGGTTTGATTTCTCCCATGAATGGGGTAGGTCCGGATGATATTAACCTGAAAACATTGATTACGCGTTTGATGGATA
GTGATGTTTCAGAAGTTATTGTTGCTACAAATGCTACGGCTGATGGGGAAGCCACTTCTATGTATATTTCTAGAGTTCTA
AAACCAGCAGGTATAAAAGTAACGCGTTTAGCTCGTGGCCTTGCAGTTGGTTCTGATATTGAATATGCTGATGAAGTTAC
TTTACTTCGAGCAATTGAAAACCGAACAGAACTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DUS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

65.152

100

0.652
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment