Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH26_RS02695 Genome accession   NZ_CP035254
Coordinates   519622..520671 (+) Length   349 a.a.
NCBI ID   WP_000653767.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 514622..525671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS02665 (EQH26_02840) - 515631..515987 (+) 357 WP_000114361.1 hypothetical protein -
  EQH26_RS02670 (EQH26_02845) dnaJ 516260..517396 (+) 1137 WP_001066305.1 molecular chaperone DnaJ -
  EQH26_RS02675 - 517718..517957 (-) 240 WP_001813906.1 hypothetical protein -
  EQH26_RS02680 (EQH26_02855) - 518119..518406 (-) 288 WP_000777760.1 hypothetical protein -
  EQH26_RS02685 (EQH26_02860) - 518416..518826 (-) 411 WP_001278301.1 HIT family protein -
  EQH26_RS02690 (EQH26_02865) pptA 518894..519625 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH26_RS02695 (EQH26_02870) pptB 519622..520671 (+) 1050 WP_000653767.1 ABC transporter permease Regulator
  EQH26_RS02700 (EQH26_02875) - 520839..521168 (-) 330 WP_238126626.1 helicase BlpT -
  EQH26_RS02705 (EQH26_02880) - 521445..521783 (+) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  EQH26_RS02710 (EQH26_02885) comE/blpR 521788..522525 (+) 738 WP_001219122.1 LytTR family DNA-binding domain-containing protein Regulator
  EQH26_RS02715 (EQH26_02890) - 522538..523878 (+) 1341 WP_000275285.1 sensor histidine kinase -
  EQH26_RS02720 (EQH26_02895) blpC 523922..524077 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  EQH26_RS02725 (EQH26_02900) - 524276..525622 (+) 1347 WP_001821937.1 IS1380-like element ISSpn5 family transposase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40570.64 Da        Isoelectric Point: 10.0008

>NTDB_id=296807 EQH26_RS02695 WP_000653767.1 519622..520671(+) (pptB) [Streptococcus pneumoniae strain TVO_1901932]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=296807 EQH26_RS02695 WP_000653767.1 519622..520671(+) (pptB) [Streptococcus pneumoniae strain TVO_1901932]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTATTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATTCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47