Detailed information NTG0296777

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EQH28_RS11055
• Genome accession: NZ_CP035252
• Coordinates: 2149157..2150254 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266660.1
• Uniprot ID: Q97N44
• Organism: Streptococcus pneumoniae strain TVO_1901934
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2144157..2155254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH28_RS11030 (EQH28_11640)	pgsA	2144678..2145223 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EQH28_RS11035 (EQH28_11645)	rodZ	2145234..2146055 (-)	822	WP_001227957.1	cytoskeleton protein RodZ	-
EQH28_RS11040 (EQH28_11650)	yfmH	2146097..2147380 (-)	1284	WP_000170215.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EQH28_RS11045 (EQH28_11655)	yfmF	2147377..2148627 (-)	1251	WP_000424271.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
EQH28_RS11050 (EQH28_11660)	yaaA	2148786..2149154 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
EQH28_RS11055 (EQH28_11665)	recF	2149157..2150254 (+)	1098	WP_000266660.1	DNA replication/repair protein RecF	Machinery gene
EQH28_RS11060 (EQH28_11670)	guaB	2150305..2151783 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
EQH28_RS11065 (EQH28_11675)	trpS	2151935..2152960 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
EQH28_RS11070 (EQH28_11680)	-	2153166..2154788 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41900.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=296777 EQH28_RS11055 WP_000266660.1 2149157..2150254(+) (recF) [Streptococcus pneumoniae strain TVO_1901934]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=296777 EQH28_RS11055 WP_000266660.1 2149157..2150254(+) (recF) [Streptococcus pneumoniae strain TVO_1901934]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGTCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q97N44

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.726	100	0.997
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46