Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMCC_RS11245 Genome accession   NC_010120
Coordinates   1885101..1885565 (-) Length   154 a.a.
NCBI ID   WP_162466967.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1883638..1884279 1885101..1885565 flank 822


Gene organization within MGE regions


Location: 1883638..1885565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS09700 (NMCC_1841) - 1883638..1884279 (+) 642 WP_012222048.1 IS1595 family transposase -
  NMCC_RS09705 (NMCC_1842) - 1884550..1884987 (+) 438 Protein_1808 HK97 family phage prohead protease -
  NMCC_RS11245 comE 1885101..1885565 (-) 465 WP_162466967.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16487.81 Da        Isoelectric Point: 10.9077

>NTDB_id=29674 NMCC_RS11245 WP_162466967.1 1885101..1885565(-) (comE) [Neisseria meningitidis 053442]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFKMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=29674 NMCC_RS11245 WP_162466967.1 1885101..1885565(-) (comE) [Neisseria meningitidis 053442]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAAAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753

Multiple sequence alignment