Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SUB_RS04620 Genome accession   NC_012004
Coordinates   895272..895937 (-) Length   221 a.a.
NCBI ID   WP_012658416.1    Uniprot ID   B9DUD6
Organism   Streptococcus uberis 0140J     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 890272..900937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS04585 (SUB0910) - 890628..891410 (+) 783 WP_012658410.1 threonine/serine ThrE exporter family protein -
  SUB_RS04590 (SUB0911) - 891401..891841 (+) 441 WP_012658411.1 threonine/serine exporter family protein -
  SUB_RS04595 - 891860..892078 (+) 219 WP_041817602.1 hypothetical protein -
  SUB_RS04600 (SUB0913) xerS 892267..893337 (+) 1071 WP_012658412.1 tyrosine recombinase XerS Machinery gene
  SUB_RS04605 (SUB0914) - 893453..893980 (-) 528 WP_012658413.1 NUDIX hydrolase -
  SUB_RS04610 (SUB0915) - 893992..894327 (-) 336 WP_012658414.1 DUF5655 domain-containing protein -
  SUB_RS04615 (SUB0916) - 894331..895275 (-) 945 WP_012658415.1 sensor histidine kinase -
  SUB_RS04620 (SUB0917) braR 895272..895937 (-) 666 WP_012658416.1 response regulator transcription factor Regulator
  SUB_RS04625 (SUB0918) - 895981..897936 (-) 1956 WP_012658417.1 FtsX-like permease family protein -
  SUB_RS04630 (SUB0919) - 897938..898690 (-) 753 WP_012658418.1 ABC transporter ATP-binding protein -
  SUB_RS04635 (SUB0920) - 898890..899375 (+) 486 WP_012658419.1 PASTA domain-containing protein -
  SUB_RS04640 (SUB0921) trmFO 899406..900740 (-) 1335 WP_012658420.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25420.23 Da        Isoelectric Point: 5.0937

>NTDB_id=29674 SUB_RS04620 WP_012658416.1 895272..895937(-) (braR) [Streptococcus uberis 0140J]
MKKAMKIYLVEDDPTILSLLKSHLEKDYQVAAVSNFRDIKNEILDFEPDLILMDITLPFFNGFYWTSEIRKQSTVPIIFI
SSSNDEMDAVMALNMGGDDYITKPFSLTILDAKIAAFLRRATQFATDSLSYKNYQLHFDSSLSNEVQKISLSPTEHKILS
LLFSNQGAIVSKEELLKSLWDNDQFIDQNTLNVNMTRLRKKLLDIDFDYIHTVRGVGYILK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=29674 SUB_RS04620 WP_012658416.1 895272..895937(-) (braR) [Streptococcus uberis 0140J]
ATGAAGAAAGCCATGAAAATTTACTTAGTGGAAGACGATCCAACCATCCTTTCCCTTTTAAAATCACATTTAGAAAAAGA
CTATCAGGTTGCTGCAGTTAGCAATTTTCGCGACATCAAAAATGAAATCCTAGACTTTGAACCTGATTTAATTCTAATGG
ATATTACCTTACCATTTTTTAATGGTTTTTATTGGACCAGTGAGATTCGCAAACAATCGACTGTTCCTATTATCTTTATT
TCCAGTTCCAATGATGAGATGGATGCGGTCATGGCCCTTAATATGGGAGGCGATGACTATATTACCAAACCCTTCTCTCT
AACTATCTTGGACGCTAAGATAGCAGCCTTTCTACGGAGAGCCACGCAATTTGCTACAGATAGCCTCAGTTACAAGAATT
ATCAGTTACATTTCGATTCTAGCTTAAGCAATGAAGTTCAAAAAATTTCCTTATCACCAACTGAACATAAGATTCTTTCA
CTCTTATTTAGTAATCAAGGAGCTATTGTTAGTAAAGAAGAGCTCCTAAAATCCCTATGGGATAACGACCAATTTATTGA
TCAAAATACCTTAAACGTCAATATGACTCGTTTAAGAAAGAAATTATTAGATATCGATTTTGATTATATTCACACCGTGA
GAGGAGTAGGCTATATCCTAAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)

Response regulator receiver domain (Response_reg)

(7-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DUD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

50.228

99.095

0.498

Multiple sequence alignment