Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SUB_RS04600 Genome accession   NC_012004
Coordinates   892267..893337 (+) Length   356 a.a.
NCBI ID   WP_012658412.1    Uniprot ID   B9DUD2
Organism   Streptococcus uberis 0140J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 887267..898337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUB_RS04580 (SUB0909) - 889408..890622 (+) 1215 WP_012658409.1 amidohydrolase -
  SUB_RS04585 (SUB0910) - 890628..891410 (+) 783 WP_012658410.1 threonine/serine ThrE exporter family protein -
  SUB_RS04590 (SUB0911) - 891401..891841 (+) 441 WP_012658411.1 threonine/serine exporter family protein -
  SUB_RS04595 - 891860..892078 (+) 219 WP_041817602.1 hypothetical protein -
  SUB_RS04600 (SUB0913) xerS 892267..893337 (+) 1071 WP_012658412.1 tyrosine recombinase XerS Machinery gene
  SUB_RS04605 (SUB0914) - 893453..893980 (-) 528 WP_012658413.1 NUDIX hydrolase -
  SUB_RS04610 (SUB0915) - 893992..894327 (-) 336 WP_012658414.1 DUF5655 domain-containing protein -
  SUB_RS04615 (SUB0916) - 894331..895275 (-) 945 WP_012658415.1 sensor histidine kinase -
  SUB_RS04620 (SUB0917) braR 895272..895937 (-) 666 WP_012658416.1 response regulator transcription factor Regulator
  SUB_RS04625 (SUB0918) - 895981..897936 (-) 1956 WP_012658417.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41596.71 Da        Isoelectric Point: 9.4921

>NTDB_id=29673 SUB_RS04600 WP_012658412.1 892267..893337(+) (xerS) [Streptococcus uberis 0140J]
MRRELLLEKIEEYKAIMPWFVLDYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDAPRIADIKLDVLEHLTKKDME
SFILYLRERPSLNTYSTKSGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVATKKKKETLASRAENIKQK
LFLGDETMEFLDYVDCEYENKLSNRAKSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLKMMVIEVTRKGGKRDS
VNVASFAKPYLEHYLEIRQKRYKADKQDQAFFLTEYRGVPNRIDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=29673 SUB_RS04600 WP_012658412.1 892267..893337(+) (xerS) [Streptococcus uberis 0140J]
ATGCGACGTGAATTACTGTTAGAAAAAATTGAAGAATACAAAGCAATCATGCCATGGTTTGTTTTAGACTATTACCAATC
CAAATTATCTGTGCCTTACAGTTTCACGACCTTATATGAATACCTTAAAGAATACAAACGCTTTTTTGATTGGCTCATTG
ACTCTGGAATTTCAGATGCTCCCAGAATTGCTGATATAAAGCTAGATGTCTTGGAACATTTGACAAAAAAAGATATGGAA
TCTTTTATTCTTTATTTGCGTGAAAGACCGTCACTAAACACCTATTCAACAAAATCTGGCGTCTCTCAAACAACCATCAA
TCGTACCTTATCAGCCCTCTCCAGCCTCTATAAATATCTCACTGAGGAAGTTGAAAACGATCAAGGGGAACCATACTTTT
ATCGAAACGTTATGAAAAAGGTTGCTACCAAGAAGAAAAAAGAAACCTTAGCCTCAAGAGCAGAAAATATCAAACAAAAG
CTCTTTCTAGGTGATGAAACCATGGAGTTTCTCGATTATGTAGATTGTGAATATGAAAACAAGCTATCAAATAGAGCAAA
ATCATCATTCCAAAAAAATAAAGAACGCGATTTAGCCATCATAGCCCTACTTCTGGCTTCTGGCGTCCGACTCTCCGAAG
CCGTTAATCTCGACTTAAAAGATGTCAATCTCAAAATGATGGTTATTGAAGTGACTCGAAAGGGTGGGAAACGTGACTCC
GTTAACGTAGCATCTTTTGCTAAACCTTACCTTGAGCATTACTTGGAAATTCGTCAAAAACGCTATAAAGCTGACAAACA
AGACCAAGCATTTTTCCTAACGGAGTATCGTGGGGTCCCCAACCGCATTGATGCTTCAAGTATTGAAAAAATGGTGGGCA
AATACTCACAAGATTTTAAAATCCGAGTAACTCCTCATAAGTTAAGGCATACGCTTGCTACCAGGCTTTACGATGCCACC
AAGTCTCAGGTATTAGTCAGTCATCAACTAGGCCATGCCTCTACACAAGTTACAGATCTATATACCCATATTGTCAATGA
CGAACAAAAGAATGCCTTAGATAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(187-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9DUD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826

Multiple sequence alignment