Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NMCC_RS09840 Genome accession   NC_010120
Coordinates   1917448..1918146 (-) Length   232 a.a.
NCBI ID   WP_012222059.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1912448..1923146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS09825 (NMCC_1864) - 1912743..1913804 (-) 1062 WP_012222056.1 peptidylprolyl isomerase -
  NMCC_RS09830 (NMCC_1865) - 1913909..1916317 (-) 2409 WP_025462020.1 LPS-assembly protein LptD -
  NMCC_RS09835 (NMCC_1866) amgK 1916387..1917391 (+) 1005 WP_012222058.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  NMCC_RS09840 (NMCC_1867) dsbA1 1917448..1918146 (-) 699 WP_012222059.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMCC_RS15380 - 1918426..1918533 (-) 108 Protein_1830 IS5/IS1182 family transposase -
  NMCC_RS09845 (NMCC_1868) murJ 1918591..1920129 (+) 1539 WP_017629028.1 murein biosynthesis integral membrane protein MurJ -
  NMCC_RS09850 (NMCC_1869) - 1920262..1921218 (+) 957 WP_012222061.1 YheT family hydrolase -
  NMCC_RS09855 (NMCC_1870) trpC 1921268..1922050 (+) 783 WP_017629026.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25241.85 Da        Isoelectric Point: 5.6277

>NTDB_id=29671 NMCC_RS09840 WP_012222059.1 1917448..1918146(-) (dsbA1) [Neisseria meningitidis 053442]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRIEHVVWQKEMLPLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKPQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=29671 NMCC_RS09840 WP_012222059.1 1917448..1918146(-) (dsbA1) [Neisseria meningitidis 053442]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCTGCTTCGGCAGCCGCCGCCCCCGCCGGACTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTCCTTGAGTTTTTCGGCTATTTCTGCCCGCACTGCGCCCAC
CTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTATCGAGCACGTCGTCTGGCAGAA
AGAAATGCTGCCGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCCGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

98.707

100

0.987
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment