Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NMCC_RS09145 Genome accession   NC_010120
Coordinates   1783068..1783712 (-) Length   214 a.a.
NCBI ID   WP_002235493.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1778068..1788712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS09110 (NMCC_1732) ftsL 1778447..1778710 (-) 264 WP_002232818.1 cell division protein FtsL -
  NMCC_RS09115 (NMCC_1733) rsmH 1778707..1779693 (-) 987 WP_017629073.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  NMCC_RS09120 (NMCC_1734) mraZ 1779690..1780145 (-) 456 WP_002212482.1 division/cell wall cluster transcriptional repressor MraZ -
  NMCC_RS09125 (NMCC_1735) - 1780451..1781641 (+) 1191 WP_161802596.1 class I SAM-dependent methyltransferase -
  NMCC_RS09140 (NMCC_1738) - 1782214..1783035 (-) 822 WP_002235494.1 undecaprenyl-diphosphate phosphatase -
  NMCC_RS09145 (NMCC_1739) dsbA1 1783068..1783712 (-) 645 WP_002235493.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMCC_RS09150 (NMCC_1740) ftsN 1783715..1784578 (-) 864 WP_002234558.1 cell division protein FtsN -
  NMCC_RS09155 (NMCC_1741) comM 1784684..1786180 (-) 1497 WP_017629071.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NMCC_RS09160 (NMCC_1742) - 1786194..1786514 (-) 321 WP_012222001.1 accessory factor UbiK family protein -
  NMCC_RS15185 - 1786569..1786694 (+) 126 WP_256998697.1 hypothetical protein -
  NMCC_RS09170 (NMCC_1743) putP 1786999..1788525 (+) 1527 WP_002220352.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23960.91 Da        Isoelectric Point: 9.5696

>NTDB_id=29665 NMCC_RS09145 WP_002235493.1 1783068..1783712(-) (dsbA1) [Neisseria meningitidis 053442]
MKLKHLLPLLLSAVLSAQAYALTEREDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKVHLEDRAVAGKWALSQKGFDGKKLMRVYDSPEAAAAASKMQK
LTEQYGIDNTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQPPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=29665 NMCC_RS09145 WP_002235493.1 1783068..1783712(-) (dsbA1) [Neisseria meningitidis 053442]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAAGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGCAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAATTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTCTGGCCAGGATGGCGGCCGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCTGTGTTTAAAGCAGTTTACGAACAGAAGGTTCATTTGGAAGACAGGGCGGTGGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGTAAAAAACTGATGCGCGTTTATGACTCTCCCGAGGCCGCAGCAGCAGCATCAAAAATGCAGAAA
CTGACAGAACAATACGGTATTGACAACACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGCCCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

55.08

87.383

0.481
  dsbA2 Neisseria meningitidis MC58

50.538

86.916

0.439

Multiple sequence alignment