Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   EQH31_RS09590 Genome accession   NZ_CP035249
Coordinates   1871264..1872163 (-) Length   299 a.a.
NCBI ID   WP_000904872.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901938     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1866264..1877163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH31_RS09570 (EQH31_10170) rsmA 1866913..1867785 (-) 873 WP_001216845.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  EQH31_RS09575 (EQH31_10175) - 1868036..1868329 (-) 294 Protein_1895 hypothetical protein -
  EQH31_RS09580 (EQH31_10180) - 1868322..1868963 (-) 642 WP_000565531.1 ABC transporter ATP-binding protein -
  EQH31_RS09585 (EQH31_10185) - 1868965..1870995 (-) 2031 WP_000825273.1 bacteriocin-associated integral membrane family protein -
  EQH31_RS09590 (EQH31_10190) comR 1871264..1872163 (-) 900 WP_000904872.1 helix-turn-helix transcriptional regulator Regulator
  EQH31_RS09595 (EQH31_10195) rnmV 1872235..1872795 (-) 561 WP_000660005.1 ribonuclease M5 -
  EQH31_RS09600 (EQH31_10200) - 1872795..1873568 (-) 774 WP_000575619.1 TatD family hydrolase -
  EQH31_RS09605 (EQH31_10210) - 1873873..1874844 (-) 972 Protein_1901 DUF1542 domain-containing protein -
  EQH31_RS09610 (EQH31_10215) rpmH 1875050..1875184 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  EQH31_RS09615 (EQH31_10220) - 1875592..1876545 (+) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35327.19 Da        Isoelectric Point: 5.0853

>NTDB_id=296507 EQH31_RS09590 WP_000904872.1 1871264..1872163(-) (comR) [Streptococcus pneumoniae strain TVO_1901938]
MLIGQKIKEIRIEKGVSRPYFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMSQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=296507 EQH31_RS09590 WP_000904872.1 1871264..1872163(-) (comR) [Streptococcus pneumoniae strain TVO_1901938]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAGTTAGTCGTCCATATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGCCTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGTCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

37.801

97.324

0.368
  comR Streptococcus suis 05ZYH33

37.801

97.324

0.368
  comR Streptococcus mutans UA159

37.415

98.328

0.368