Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   NMCC_RS03925 Genome accession   NC_010120
Coordinates   754725..758339 (-) Length   1204 a.a.
NCBI ID   WP_012221467.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749725..763339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS03895 (NMCC_0746) - 749744..750634 (-) 891 WP_234944848.1 restriction endonuclease PLD domain-containing protein -
  NMCC_RS14960 - 750615..750785 (-) 171 WP_234944849.1 hypothetical protein -
  NMCC_RS03900 (NMCC_0747) - 750782..751906 (-) 1125 WP_012221464.1 DNA cytosine methyltransferase -
  NMCC_RS03910 (NMCC_0748) radA 752273..753652 (+) 1380 WP_012221465.1 DNA repair protein RadA Machinery gene
  NMCC_RS03915 (NMCC_0749) - 753723..754202 (-) 480 WP_012221466.1 DUF302 domain-containing protein -
  NMCC_RS03920 (NMCC_0750) - 754327..754686 (-) 360 WP_002244926.1 rhodanese-like domain-containing protein -
  NMCC_RS03925 (NMCC_0751) recB 754725..758339 (-) 3615 WP_012221467.1 exodeoxyribonuclease V subunit beta Machinery gene
  NMCC_RS03930 (NMCC_0752) - 758419..759327 (-) 909 WP_002217584.1 Dyp-type peroxidase -
  NMCC_RS03935 (NMCC_0753) - 759612..760442 (+) 831 WP_017629047.1 amino acid ABC transporter substrate-binding protein -
  NMCC_RS03940 (NMCC_0754) - 760432..761148 (+) 717 WP_002213985.1 amino acid ABC transporter permease -
  NMCC_RS03945 (NMCC_0755) - 761158..761913 (+) 756 WP_012221470.1 amino acid ABC transporter ATP-binding protein -
  NMCC_RS03950 (NMCC_0756) - 761933..763315 (-) 1383 WP_012221471.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134830.17 Da        Isoelectric Point: 5.6628

>NTDB_id=29647 NMCC_RS03925 WP_012221467.1 754725..758339(-) (recB) [Neisseria meningitidis 053442]
MSAPIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVELTEEDGDRLLIPAQDFWRERVSNDPVLAALAFKRKAVPQTVLAQIRAYLSRPYLNFRRPQADLKQAQRNAETS
WQTVCRLLPELEAGFWRIHPDLNGNSYRKNSFGNLFKELAQKSAAGQLPFLDKDTHDRLLKLASDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDARHRYTLATNYRSHAALIGSIG
ALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNF
KGYPLQSGDIAVLVRTHNEAVMVSAALKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDA
QQLHDFNQNESEILHWAESARTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLADNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTADTPLAYLIEGSPQDSRETVRQTYAQEKDGIAMLKRNW
RRLADNAPAGTDFVFTEDAPPPAAYRGNADQTAEFAANSIPERGFRFVRHTSFTTLSRHTQTPDGSEEDACPSLDAAETS
VPAMPSETPTASDGISIHNFPKGTQAGLCLHEILENFKFGQAAAGQETFITDKLKKYGFEEIWLPAVAEMAEACQKTPLT
GAYGLSDILSECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICVI
DYKSNHLGTDASAYTQQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDADTL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=29647 NMCC_RS03925 WP_012221467.1 754725..758339(-) (recB) [Neisseria meningitidis 053442]
ATGTCTGCACCCATCCAAGCATTTGACCCGCTGACCGTCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACGCGCCTGATCGTATTAGAACAAAAAAACGTCGAACGCGTATTGGTCG
TAACCTTCACCAAAGCCGCCACCGCCGAGTTGAAAACACGCCTGCGCGCACGTTTGGACGATGTGTTGCAGGTTTTAGAA
AGTAAAGAAATTGCCAAACTTGGAGACGACACGCTTTCAGACGGCATCGCCGCCTATTGTGCGGAACACCACAAAGGCGA
CACCTTCCTGCCCGCACTCTTAAAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAGGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTATACCATCCACGGCTTCTGCCAACGTATCCTGCGCGACTACGCCTTCTTGTGC
CAAGCACCGTTCGATGTCGAACTGACCGAAGAAGACGGCGACCGCCTGCTTATCCCGGCGCAAGATTTTTGGCGGGAACG
CGTCAGCAATGATCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAGCTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTGTCCCGCCCGTACCTGAATTTCCGCCGTCCGCAGGCGGATTTGAAACAGGCGCAGCGCAACGCCGAAACCTCA
TGGCAAACCGTCTGCCGCCTGCTGCCCGAGCTGGAAGCCGGCTTTTGGCGCATCCATCCCGACCTCAACGGCAACAGTTA
CCGCAAAAACAGCTTCGGCAACCTTTTTAAAGAACTGGCACAAAAATCCGCCGCCGGACAACTGCCCTTTCTGGACAAAG
ACACGCACGACAGACTCTTGAAACTTGCGTCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATGAT
CCGGCTGCAACTGGATTTAATCGAATACCTCAACCGCAGCCTTGCCGAGATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCGCTGACCGACAATCCGCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAAATCTTCATCGCCCA
AAACCGACCGCTGTTCCTCGTCGGCGATCCCAAACAGGCGATTTACAGCTTTCGCGGAGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCGGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATAGGC
GCGCTGTTCCGCCTCAAAGAACGCCCGTTCGTTTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGATTGTCGCCCAAACGTCCTGCCGTACAGGTTCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGACGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGAGGCCGTCTGAATTTC
AAAGGCTACCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTCCGCACGCACAACGAGGCGGTGATGGTTTCCGCCGCCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTTTCCGCAC
TCATCGGCTTCTGGCTCGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCGGCATATTCGGTTATGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAGATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATCAATACGGCATTTTCGCCGCCATGCAGCAATTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCCCAAAACCGCAACCCCGCCGCG
CTGCACAAATGGCTGCGCGACCAAATCAGCCTAGCCGACAACAACGGCGGCGACAACCGCGCCATCCGTCTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGCCCGTTTGCGTGGG
ACGCGCAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCCAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGATGAGGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCAGAGGAACAGCTCAACATCTACGCCGCATACTCCACCAATACTGCCGACACCCCCCTCGCCTACCTGATTGAAGGCT
CGCCCCAAGACAGCCGCGAAACCGTCCGCCAAACCTATGCCCAAGAAAAGGACGGCATCGCGATGCTCAAACGCAACTGG
CGGCGTTTGGCGGACAACGCCCCAGCCGGCACGGATTTCGTCTTCACAGAAGATGCGCCGCCCCCTGCCGCCTATCGCGG
CAACGCCGATCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCGGATTCCGATTTGTCCGCCACACCAGCTTTA
CCACCTTAAGCCGCCATACCCAAACGCCCGACGGCAGTGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCA
GTGCCGGCAATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGATACACAACTTTCCGAAAGGCACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAAATTTCAAATTCGGACAAGCAGCCGCCGGACAGGAAACCTTCATCACCGACAAGC
TGAAAAAATACGGATTTGAAGAAATATGGCTGCCTGCCGTTGCCGAAATGGCGGAAGCCTGCCAAAAAACGCCGCTGACG
GGGGCATACGGCCTGTCCGACATCCTATCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCACACCGAAGACTTCGG
TCTCAAACGGCTGCGCGACTGGTTTGCCCGCGACGACATCAGGCTACCCGAAGTCTGCCGTGCCGCCGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGACATGGTCTGCCAAGACCCCGACGGCAATATCTGCGTCATC
GACTACAAGTCGAACCACCTCGGCACGGACGCATCCGCCTACACGCAACAGGCAATGGACGAAGCCGTCGCGCACCACCA
CTATTACCTTCAGGCACTGATTTACGCCGTTGCCGCCGCACGCTACTTCAAGCTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGACACTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1069-1182)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-652)

UvrD-like helicase C-terminal domain (UvrD_C)

(743-835)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

94.767

100

0.948

Multiple sequence alignment