Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NMCC_RS03910 Genome accession   NC_010120
Coordinates   752273..753652 (+) Length   459 a.a.
NCBI ID   WP_012221465.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 747273..758652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS03890 (NMCC_0745) - 747854..749743 (-) 1890 WP_012221462.1 Z1 domain-containing protein -
  NMCC_RS03895 (NMCC_0746) - 749744..750634 (-) 891 WP_234944848.1 restriction endonuclease PLD domain-containing protein -
  NMCC_RS14960 - 750615..750785 (-) 171 WP_234944849.1 hypothetical protein -
  NMCC_RS03900 (NMCC_0747) - 750782..751906 (-) 1125 WP_012221464.1 DNA cytosine methyltransferase -
  NMCC_RS03910 (NMCC_0748) radA 752273..753652 (+) 1380 WP_012221465.1 DNA repair protein RadA Machinery gene
  NMCC_RS03915 (NMCC_0749) - 753723..754202 (-) 480 WP_012221466.1 DUF302 domain-containing protein -
  NMCC_RS03920 (NMCC_0750) - 754327..754686 (-) 360 WP_002244926.1 rhodanese-like domain-containing protein -
  NMCC_RS03925 (NMCC_0751) recB 754725..758339 (-) 3615 WP_012221467.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49577.09 Da        Isoelectric Point: 7.3293

>NTDB_id=29646 NMCC_RS03910 WP_012221465.1 752273..753652(+) (radA) [Neisseria meningitidis 053442]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=29646 NMCC_RS03910 WP_012221465.1 752273..753652(+) (radA) [Neisseria meningitidis 053442]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTAGCCGCGCCCGAGCCGAAAAATGCCCGTTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGACGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GCTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTACTGTACGTTTCCGGCGAGGAATCCGCCCAACAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCGACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCCATTCAGACGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCTGG
TTCCGTGTCGCAGGTGCGCGAGTGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGTGCGATTGCCGGTCCGCGCGTGCTGGAGCATATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAGCATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTATTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTTACGCAGGAAGGCAGCCGACCGCTTTTGGTTGAAATTCAGGCATTGGTCGATGACGCGCACGGATTCACC
CCCAAACGCCTTACCGTCGGACTGGAACAAAACCGCCTTGCGATGCTGCTTGCCGTGTTAAACCGACACGGCGGCATCGC
CTGTTTCGACCAAGACGTGTTTCTCAATGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCAGTCATCC
TCGCGATGCTTTCCAGCTTCCGCAACCGCCCCATGCCCGAAAAAACCGTGGTTTTCGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCTGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATTGTTCCCAAAGC
CAATATGCCGCGCAACGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.33

99.129

0.499
  radA Streptococcus mitis NCTC 12261

47.672

98.257

0.468
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464

Multiple sequence alignment