Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EQH31_RS01935 Genome accession   NZ_CP035249
Coordinates   375801..376433 (+) Length   210 a.a.
NCBI ID   WP_000698434.1    Uniprot ID   Q9S1J7
Organism   Streptococcus pneumoniae strain TVO_1901938     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 370801..381433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH31_RS01910 (EQH31_02020) mvaD 371078..372031 (+) 954 WP_000373452.1 diphosphomevalonate decarboxylase -
  EQH31_RS01915 (EQH31_02025) - 372018..373025 (+) 1008 WP_000562440.1 phosphomevalonate kinase -
  EQH31_RS01920 (EQH31_02030) fni 373009..374019 (+) 1011 WP_000210618.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  EQH31_RS01925 (EQH31_02035) liaF 374097..374795 (+) 699 WP_001224637.1 cell wall-active antibiotics response protein LiaF -
  EQH31_RS01930 (EQH31_02040) - 374792..375787 (+) 996 WP_000743686.1 sensor histidine kinase -
  EQH31_RS01935 (EQH31_02045) vraR 375801..376433 (+) 633 WP_000698434.1 response regulator transcription factor Regulator
  EQH31_RS11030 (EQH31_02050) - 376434..376676 (+) 243 WP_001854757.1 DNA alkylation repair protein -
  EQH31_RS01940 - 376658..377200 (+) 543 Protein_385 DNA alkylation repair protein -
  EQH31_RS01945 (EQH31_02065) - 377350..377589 (+) 240 WP_000754502.1 hypothetical protein -
  EQH31_RS01950 (EQH31_02070) cbpG 377670..378260 (+) 591 Protein_387 choline-binding protein CbpG -
  EQH31_RS01955 (EQH31_02075) - 378616..378921 (+) 306 WP_001821501.1 tyrosine-type recombinase/integrase -
  EQH31_RS01960 (EQH31_02080) tig 379115..380398 (+) 1284 WP_000116462.1 trigger factor -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23553.03 Da        Isoelectric Point: 4.5791

>NTDB_id=296437 EQH31_RS01935 WP_000698434.1 375801..376433(+) (vraR) [Streptococcus pneumoniae strain TVO_1901938]
MKILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGIDATLAILKEWPEAKILIV
TSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIAKGY
ENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLVGQEEF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=296437 EQH31_RS01935 WP_000698434.1 375801..376433(+) (vraR) [Streptococcus pneumoniae strain TVO_1901938]
ATGAAAATTTTACTAGTAGATGACCATGAAATGGTCCGTTTGGGCTTGAAAAGCTACTTTGACCTCCAAGACGATGTAGA
AGTTGTGGGTGAGGCGTCCAACGGGTCTCAAGGGATTGACTTGGCCTTGGAACTGCGTCCAGATGTCATTGTCATGGATA
TTGTCATGCCTGAGATGAATGGGATTGACGCGACCTTAGCAATCCTTAAAGAATGGCCTGAAGCCAAGATTTTGATTGTG
ACCTCTTATTTGGACAATGAAAAAATCATGCCAGTCTTAGATGCTGGTGCCAAAGGCTATATGCTCAAGACTTCTAGTGC
AGATGAATTGCTTCATGCCGTCAGTAAGGTAGCTGCTGGCGAGCTGGCCATTGAGCAAGAGGTTAGCAAGAAGGTTGAAT
ACCACCGCAATCATATGGAACTTCATGAAGAATTGACTGCGCGTGAGCGAGATGTTCTCCAACTCATCGCCAAGGGCTAC
GAAAATCAGCGCATCGCAGATGACCTCTTTATCTCTCTCAAGACGGTCAAGACCCACGTGTCCAATATTCTTGCCAAACT
TGAAGTCAGCGATCGTACCCAGGCGGCTGTCTATGCCTTTCAGCACCATTTGGTGGGGCAAGAGGAGTTTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9S1J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.153

99.524

0.519
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.41