Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMCC_RS00965 Genome accession   NC_010120
Coordinates   187953..188417 (+) Length   154 a.a.
NCBI ID   WP_162466963.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182953..193417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS00965 (NMCC_0188) comE 187953..188417 (+) 465 WP_162466963.1 ComEA family DNA-binding protein Machinery gene
  NMCC_RS00970 (NMCC_0189) comP 188505..188954 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMCC_RS15270 - 189044..189282 (-) 239 Protein_168 5'-nucleotidase -
  NMCC_RS00980 (NMCC_0191) - 189496..189708 (-) 213 WP_012221178.1 SWIM zinc finger family protein -
  NMCC_RS00990 (NMCC_0192) - 190065..190709 (+) 645 WP_002223148.1 hypothetical protein -
  NMCC_RS00995 (NMCC_0193) - 190725..191816 (+) 1092 WP_002223147.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16503.76 Da        Isoelectric Point: 10.8190

>NTDB_id=29632 NMCC_RS00965 WP_162466963.1 187953..188417(+) (comE) [Neisseria meningitidis 053442]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFKMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=29632 NMCC_RS00965 WP_162466963.1 187953..188417(+) (comE) [Neisseria meningitidis 053442]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAAAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment