Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DM558_RS00215 Genome accession   NZ_CP029822
Coordinates   48493..49896 (-) Length   467 a.a.
NCBI ID   WP_127161512.1    Uniprot ID   A0A3S9XA25
Organism   Entomomonas moraniae strain QZS01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 43493..54896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM558_RS00195 (DM558_00195) ahcY 43778..45169 (-) 1392 WP_407644296.1 adenosylhomocysteinase -
  DM558_RS00200 (DM558_00200) - 45450..45860 (-) 411 WP_109703574.1 hypothetical protein -
  DM558_RS00205 (DM558_00205) - 45988..47469 (-) 1482 WP_127161510.1 dual specificity protein phosphatase family protein -
  DM558_RS00210 (DM558_00210) - 47611..48489 (-) 879 WP_127161511.1 LysR family transcriptional regulator -
  DM558_RS00215 (DM558_00215) pilR 48493..49896 (-) 1404 WP_127161512.1 sigma-54 dependent transcriptional regulator Regulator
  DM558_RS00220 (DM558_00220) - 49908..51518 (-) 1611 WP_164731202.1 nitrogen regulation protein NR(II) -
  DM558_RS00225 - 51520..51744 (-) 225 WP_127161514.1 PP0621 family protein -
  DM558_RS00230 (DM558_00225) - 51814..52527 (-) 714 WP_127161515.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DM558_RS00235 (DM558_00230) - 52524..52874 (-) 351 WP_127161516.1 phosphoribosyl-ATP diphosphatase -
  DM558_RS00240 (DM558_00235) hisI 52880..53272 (-) 393 WP_127161517.1 phosphoribosyl-AMP cyclohydrolase -
  DM558_RS00245 (DM558_00240) ubiB 53281..54891 (-) 1611 WP_127161518.1 ubiquinone biosynthesis regulatory protein kinase UbiB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52440.27 Da        Isoelectric Point: 5.9330

>NTDB_id=296192 DM558_RS00215 WP_127161512.1 48493..49896(-) (pilR) [Entomomonas moraniae strain QZS01]
MTQTKILIIDDEPDIRELLEITLGRLKLQTRSVGTIKDATEILKKEDFCMCLTDMKLPDGDGLDFISYTQQHYPQMPIAM
ITAHGSMDTAIIALKAGAFDYLTKPIDLNRLREIIKSALNLNTNKVDNIPLDKQFLGENPLIQTLRDQVNKVARSQAPVY
INGESGTGKEVIAHLIHLQGSRAKQSFIAVNCGAIPSELMESEFFGHRKGSFTGANQDKIGLFQAAQGGTLFLDEVADLP
LNMQVKLLRAIQEKSIRVVGDQQEQPIDVRILCATHADLAARVVDGKFRQDLYYRLNVIELKIPPLRAHKDDIPLLANAL
IKRAEYNVELSNAAIEKLKTYDFPGNVRELENILERAYTLCENGVIQPTDLRFASITSIEVASSPILQQPIQPRTSNSVV
TRPSTTNLDHLPDLSEVDNLEEYLELIERKILTQALDENRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=296192 DM558_RS00215 WP_127161512.1 48493..49896(-) (pilR) [Entomomonas moraniae strain QZS01]
ATGACTCAAACAAAAATTTTAATTATAGACGATGAGCCAGATATTAGAGAACTTCTAGAAATAACACTGGGGCGTTTAAA
ATTACAAACGCGCTCAGTAGGTACTATAAAAGATGCAACAGAAATACTTAAAAAAGAAGATTTCTGTATGTGTCTAACAG
ATATGAAACTGCCTGATGGGGACGGTTTAGACTTTATCTCCTATACACAACAACATTATCCACAAATGCCTATTGCCATG
ATTACCGCACACGGGAGCATGGACACCGCTATTATTGCTTTAAAAGCAGGGGCATTTGATTATCTGACTAAACCAATCGA
TTTAAATCGTTTACGTGAAATTATAAAGTCAGCGCTGAATTTGAATACGAATAAAGTGGATAACATTCCTCTTGATAAAC
AGTTCCTGGGAGAAAATCCTCTTATTCAGACATTACGCGATCAAGTCAATAAGGTAGCAAGGAGCCAAGCCCCTGTATAT
ATTAATGGGGAGTCAGGGACAGGGAAAGAAGTAATTGCACACTTAATTCACTTACAAGGTTCCCGCGCAAAACAATCTTT
TATTGCTGTAAACTGTGGAGCAATCCCTTCAGAACTTATGGAAAGTGAATTTTTTGGTCACCGTAAAGGAAGTTTTACAG
GAGCCAACCAAGATAAAATCGGCCTTTTCCAAGCAGCTCAAGGTGGAACCCTCTTTTTAGATGAAGTGGCTGATCTTCCA
CTCAATATGCAAGTAAAATTACTCCGTGCTATCCAAGAAAAATCAATTCGTGTTGTTGGTGATCAACAAGAACAACCCAT
TGATGTAAGAATTCTTTGTGCAACACATGCTGATTTAGCCGCCAGAGTGGTTGATGGAAAATTCAGACAAGACCTTTATT
ATCGACTCAATGTTATTGAGTTAAAAATTCCTCCGCTTAGGGCTCATAAGGACGATATTCCATTATTGGCAAATGCGCTG
ATAAAAAGAGCAGAATATAATGTTGAATTATCAAATGCGGCCATTGAAAAGCTCAAAACCTATGATTTCCCAGGCAACGT
TCGTGAACTAGAAAATATTTTAGAGCGGGCTTATACACTTTGTGAAAATGGAGTTATTCAACCTACTGACTTACGCTTTG
CCAGCATAACCTCTATAGAAGTGGCATCGTCCCCTATACTGCAACAACCAATACAGCCCAGAACTTCAAACTCAGTGGTC
ACAAGGCCATCAACAACTAATCTAGATCATCTTCCTGACTTAAGCGAAGTGGATAATCTAGAGGAGTATCTCGAACTCAT
AGAAAGAAAAATTCTCACTCAAGCACTGGATGAAAATCGTTGGAATAGAACAGCTGCGGCTGAACGACTTGGATTATCAT
TTCGCTCCATGCGCTATCGCTTAAAAAAACTAGGCATAGACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S9XA25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.713

100

0.647
  pilR Acinetobacter baumannii strain A118

46.723

100

0.473

Multiple sequence alignment