Detailed information NTG0296175

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EQH34_RS10275
• Genome accession: NZ_CP035246
• Coordinates: 2032805..2033902 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266670.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain TVO_1901941
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2027805..2038902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH34_RS10250 (EQH34_10840)	pgsA	2028326..2028871 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EQH34_RS10255 (EQH34_10845)	rodZ	2028882..2029703 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
EQH34_RS10260 (EQH34_10850)	yfmH	2029745..2031028 (-)	1284	WP_000170213.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EQH34_RS10265 (EQH34_10855)	yfmF	2031025..2032275 (-)	1251	WP_000424259.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
EQH34_RS10270 (EQH34_10860)	yaaA	2032434..2032802 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
EQH34_RS10275 (EQH34_10865)	recF	2032805..2033902 (+)	1098	WP_000266670.1	DNA replication/repair protein RecF	Machinery gene
EQH34_RS10280 (EQH34_10870)	guaB	2033953..2035431 (-)	1479	WP_000073429.1	IMP dehydrogenase	-
EQH34_RS10285 (EQH34_10875)	trpS	2035583..2036608 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
EQH34_RS10290 (EQH34_10880)	-	2036814..2038436 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41927.06 Da
• Isoelectric Point: 9.3082

>NTDB_id=296175 EQH34_RS10275 WP_000266670.1 2032805..2033902(+) (recF) [Streptococcus pneumoniae strain TVO_1901941]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSVQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQNGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=296175 EQH34_RS10275 WP_000266670.1 2032805..2033902(+) (recF) [Streptococcus pneumoniae strain TVO_1901941]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAGCTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTATCTAAAATCAGTTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGAATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.178	100	0.992
recF	Bacillus subtilis subsp. subtilis str. 168	46.175	100	0.463