Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DLE54_RS10355 Genome accession   NZ_CP029789
Coordinates   2530957..2531346 (-) Length   129 a.a.
NCBI ID   WP_110817091.1    Uniprot ID   A0A844M122
Organism   Psychrobacter sp. YP14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2525957..2536346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLE54_RS10340 (DLE54_10340) - 2528051..2529226 (-) 1176 Protein_1986 methyl-accepting chemotaxis protein -
  DLE54_RS10345 (DLE54_10345) - 2529948..2530487 (-) 540 WP_110817089.1 chemotaxis protein CheW -
  DLE54_RS10350 (DLE54_10350) - 2530493..2530855 (-) 363 WP_110817090.1 response regulator -
  DLE54_RS10355 (DLE54_10355) pilG 2530957..2531346 (-) 390 WP_110817091.1 twitching motility response regulator PilG Regulator
  DLE54_RS10360 (DLE54_10360) - 2532047..2532769 (+) 723 WP_011961373.1 response regulator transcription factor -
  DLE54_RS10365 (DLE54_10365) - 2532887..2534695 (+) 1809 WP_110817092.1 sensor histidine kinase -
  DLE54_RS10370 (DLE54_10370) - 2534816..2535724 (-) 909 WP_110817093.1 histone deacetylase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14501.75 Da        Isoelectric Point: 5.2295

>NTDB_id=296044 DLE54_RS10355 WP_110817091.1 2530957..2531346(-) (pilG) [Psychrobacter sp. YP14]
MDISFEGLKVMVIDDSKTIRRTAEMLLQRVGCDVVTAVDGFEALAKIADYKPEIIFIDVVMPRLDGYQTCAIVKNNKDFA
DTPVIMLSSKDGLFDKARGRIVGADEYLTKPFSKDELYTAIQQHHKADR

Nucleotide


Download         Length: 390 bp        

>NTDB_id=296044 DLE54_RS10355 WP_110817091.1 2530957..2531346(-) (pilG) [Psychrobacter sp. YP14]
ATGGACATAAGTTTTGAGGGGCTAAAGGTGATGGTGATTGATGATTCAAAAACCATTCGACGTACAGCCGAGATGTTATT
ACAAAGAGTGGGCTGTGATGTGGTCACTGCAGTAGATGGATTTGAGGCTTTGGCCAAGATAGCCGACTACAAGCCTGAGA
TTATCTTTATTGATGTGGTGATGCCGCGCTTAGATGGTTATCAAACCTGCGCCATTGTAAAAAATAACAAAGACTTTGCC
GATACCCCAGTGATTATGTTGTCCTCAAAAGATGGTCTGTTTGATAAAGCGCGCGGACGCATTGTGGGGGCAGATGAGTA
TTTGACCAAGCCCTTTAGTAAAGATGAGCTATATACGGCCATTCAGCAGCATCACAAGGCCGACCGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844M122

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

71.774

96.124

0.69
  vicR Streptococcus mutans UA159

41.379

89.922

0.372

Multiple sequence alignment