Detailed information NTG0295975

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: DM292_RS05555
• Genome accession: NZ_CP029772
• Coordinates: 1184903..1187128 (+)
• Length: 741 a.a.
• NCBI ID: WP_110776485.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain R2A2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1179903..1192128

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DM292_RS05525 (DM292_05525)	-	1180059..1180367 (-)	309	WP_110776483.1	phosphodiesterase	-
DM292_RS05530 (DM292_05530)	-	1180371..1181006 (-)	636	WP_110776484.1	PilZ domain-containing protein	-
DM292_RS05535 (DM292_05535)	-	1181040..1182287 (+)	1248	WP_102840158.1	lipoprotein-releasing ABC transporter permease subunit	-
DM292_RS05540 (DM292_05540)	lolD	1182295..1182984 (+)	690	WP_063539901.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
DM292_RS05545 (DM292_05545)	-	1182984..1184228 (+)	1245	WP_110778969.1	lipoprotein-releasing ABC transporter permease subunit	-
DM292_RS05550 (DM292_05550)	-	1184241..1184756 (-)	516	WP_063539900.1	DUF2062 domain-containing protein	-
DM292_RS05555 (DM292_05555)	comA	1184903..1187128 (+)	2226	WP_110776485.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
DM292_RS05560 (DM292_05560)	-	1187200..1187832 (+)	633	WP_063539899.1	MotA/TolQ/ExbB proton channel family protein	-
DM292_RS05565 (DM292_05565)	-	1187829..1188257 (+)	429	WP_063539898.1	biopolymer transporter ExbD	-
DM292_RS05570 (DM292_05570)	lpxK	1188257..1189261 (+)	1005	WP_110776486.1	tetraacyldisaccharide 4'-kinase	-
DM292_RS05575 (DM292_05575)	-	1189307..1189492 (+)	186	WP_011913743.1	Trm112 family protein	-
DM292_RS05580 (DM292_05580)	kdsB	1189489..1190253 (+)	765	WP_110776487.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
DM292_RS05585 (DM292_05585)	-	1190255..1190722 (+)	468	WP_110776488.1	low molecular weight protein-tyrosine-phosphatase	-
DM292_RS05590 (DM292_05590)	murB	1190719..1191738 (+)	1020	WP_110776489.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80864.26 Da
• Isoelectric Point: 9.2230

>NTDB_id=295975 DM292_RS05555 WP_110776485.1 1184903..1187128(+) (comA) [Stutzerimonas frequens strain R2A2]
MRTWMLALAAGLVLPRFLPALPAQWFCAALAAVGLLLLLRVRWVAPGLFLLGLSWACYQSQSAIDDRLPASMDGRTFWIE
GRVVGLPSRIGNVVRFELDDIESRHAGLPSTVRLSWYDGPLLQAGERWRLAARLKRPHGMVNPHSFDYEAWLLARRIGAT
GTIKAGERLTASRASDGWRDRLRARLMAVPASDRQGAIAALVVGDDSGLSRGDWQVLQDTGTVHLMVISGQHIGMLAGLL
YGLVALLARLGAWPRRLPWLPWACGLALSGALAYGWLAGFEVPVRRACLMVTVVLVWRLRFRHLGVWLPLLLALDGVLLI
DPLVTLQPGFWLSFGAVAVLALAFSGRLGSWRWWKVLTRAQWAATLGLLPLLLAMGLPISASGPLANLLAVPWVSLTVPF
ALLGTLLLPLGGAGEALLSMVGFSLALLFDVLAAIANWQPAWIAVGLPVWALALIGLGVLLLLLPAGIPLRSLGFVLLLP
LAFPPRVEVPEGRAQVWVLDVGQGLAVLVRTREHALLYDAGPKQGEFDTGERVVVPSLRTLGASRLDLLLLSHADNDHSG
GAEAVQRLLRVERVVSGEPSRHAPDLGAEPCESGSTWQWNDVRFSLWQWQAAQDSNQQSCVLQIEANGERILLTGDIDQP
AEQAWLASEQQMSSHWLLLPHHGSRSSSSEPFLQGVAAQAALISRSLHNPFGHPHPSVTARLEAFDIKAYDNALHGAIRI
DLGSFSPPELQRSQRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=295975 DM292_RS05555 WP_110776485.1 1184903..1187128(+) (comA) [Stutzerimonas frequens strain R2A2]
ATGCGCACATGGATGCTTGCGCTCGCCGCGGGCCTGGTCCTGCCACGCTTCCTTCCAGCCTTGCCCGCTCAGTGGTTCTG
TGCGGCGCTGGCTGCTGTCGGACTGTTGCTGCTGCTGCGCGTCCGCTGGGTGGCGCCAGGCCTGTTTCTGCTGGGCTTGA
GCTGGGCCTGCTACCAGAGCCAGAGCGCCATCGACGACCGCTTGCCAGCGTCCATGGACGGTCGCACGTTCTGGATCGAG
GGGCGGGTAGTGGGGTTGCCCAGCCGTATCGGCAATGTGGTGCGCTTCGAGCTCGACGACATCGAATCGCGCCATGCCGG
GTTGCCGTCGACGGTGCGGCTGTCCTGGTATGACGGTCCGCTGCTGCAAGCCGGGGAGCGCTGGCGGCTGGCGGCGCGAC
TGAAACGGCCACATGGCATGGTCAACCCGCATTCCTTCGATTACGAAGCCTGGTTGCTCGCGCGACGTATCGGCGCCACC
GGCACGATCAAGGCGGGTGAGCGCCTGACGGCGTCGAGGGCAAGCGACGGATGGCGCGATCGGCTTCGGGCGCGGCTCAT
GGCCGTTCCGGCATCCGATCGGCAGGGCGCCATCGCGGCACTGGTGGTGGGTGACGATTCCGGTTTGAGCCGCGGCGACT
GGCAGGTGCTGCAAGACACCGGCACCGTCCACCTGATGGTCATCTCCGGGCAGCACATCGGCATGCTGGCGGGGCTGCTC
TATGGTCTGGTCGCATTGCTGGCTCGCCTGGGTGCGTGGCCGCGGCGGTTGCCATGGTTGCCCTGGGCGTGCGGGCTGGC
GTTAAGCGGCGCGCTGGCCTATGGCTGGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGTGCCTGCCTGATGGTGACGGTGG
TGCTTGTCTGGCGGTTGCGCTTTCGCCATCTGGGCGTCTGGTTGCCGCTGCTGCTGGCGCTCGATGGCGTCCTGCTGATC
GATCCCCTGGTGACATTGCAGCCCGGGTTCTGGCTGTCGTTTGGAGCGGTGGCGGTTCTGGCATTGGCGTTCTCGGGGCG
GCTCGGTTCATGGCGCTGGTGGAAGGTCCTGACCCGGGCGCAGTGGGCGGCCACCCTCGGCCTGCTTCCGCTGTTGCTCG
CCATGGGGCTGCCGATAAGCGCGAGCGGGCCGCTGGCCAATCTGCTTGCCGTGCCTTGGGTGAGTCTCACCGTGCCCTTT
GCGTTGCTTGGTACGCTGCTGCTGCCGCTGGGCGGGGCTGGTGAAGCGTTGCTGTCGATGGTGGGCTTTTCGCTGGCACT
GCTGTTCGACGTGCTGGCAGCGATAGCCAATTGGCAACCCGCCTGGATTGCGGTCGGCCTGCCCGTCTGGGCTCTGGCGT
TAATCGGGCTGGGCGTCCTGTTGCTGTTGCTGCCAGCCGGTATTCCGCTGCGTTCGCTGGGCTTTGTGCTGCTGTTGCCG
TTGGCATTCCCGCCTCGTGTCGAGGTCCCGGAGGGCCGAGCGCAGGTCTGGGTGCTGGATGTGGGCCAGGGCCTGGCGGT
GCTGGTGCGCACCCGCGAGCATGCACTGCTTTACGATGCCGGGCCGAAACAGGGCGAGTTCGACACGGGCGAGCGGGTGG
TGGTCCCATCGCTCCGCACCCTTGGCGCGAGCCGGTTGGACCTGCTGTTGCTTAGCCATGCCGATAATGATCATTCGGGC
GGTGCGGAGGCGGTCCAGCGGCTACTCCGGGTCGAGCGGGTGGTCAGTGGCGAGCCGTCTCGCCACGCGCCGGATCTGGG
CGCCGAACCTTGCGAAAGCGGCAGCACTTGGCAATGGAACGATGTGCGCTTCAGTCTGTGGCAATGGCAGGCGGCGCAGG
ACAGCAACCAGCAGTCCTGCGTGCTGCAGATCGAGGCCAACGGCGAGCGAATCCTGCTCACCGGTGACATCGACCAGCCC
GCCGAGCAGGCTTGGCTGGCAAGTGAGCAGCAGATGTCATCGCACTGGCTGCTGCTGCCCCATCACGGCAGCCGCAGCTC
CTCGTCGGAGCCGTTTCTGCAAGGCGTGGCCGCGCAAGCCGCGCTGATCTCGCGAAGTCTGCACAATCCGTTCGGCCACC
CGCACCCGAGCGTGACCGCGCGGCTCGAGGCGTTCGATATCAAGGCCTACGACAACGCGTTGCATGGCGCCATCCGGATC
GATCTGGGCAGTTTTTCGCCGCCAGAGCTGCAACGCTCGCAGCGACGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (201-464)

• Domain of unknown function (DUF4131) (DUF4131) (23-168)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-653)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	65.966	96.356	0.636
comA	Ralstonia pseudosolanacearum GMI1000	36.589	100	0.379