Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CFC57_RS08180 Genome accession   NZ_CP029751
Coordinates   1648182..1648868 (-) Length   228 a.a.
NCBI ID   WP_078064170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Smith     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1643182..1653868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFC57_RS08160 (CFC57_08520) rpsT 1644096..1644347 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  CFC57_RS08165 (CFC57_08525) holA 1644392..1645366 (-) 975 WP_001282559.1 DNA polymerase III subunit delta -
  CFC57_RS08170 (CFC57_08530) comEC 1645423..1647624 (-) 2202 WP_025174733.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CFC57_RS08175 (CFC57_08535) - 1647629..1648090 (-) 462 WP_000439694.1 ComE operon protein 2 -
  CFC57_RS08180 (CFC57_08540) comEA 1648182..1648868 (-) 687 WP_078064170.1 ComEA family DNA-binding protein Machinery gene
  CFC57_RS08185 (CFC57_08545) - 1648908..1649624 (-) 717 WP_000084823.1 class I SAM-dependent methyltransferase -
  CFC57_RS08190 (CFC57_08550) rsfS 1649627..1649980 (-) 354 WP_001088020.1 ribosome silencing factor -
  CFC57_RS08195 (CFC57_08555) yqeK 1649981..1650565 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  CFC57_RS08200 (CFC57_08560) nadD 1650555..1651124 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  CFC57_RS08205 (CFC57_08565) yhbY 1651127..1651417 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  CFC57_RS08210 (CFC57_08570) aroE 1651421..1652227 (-) 807 WP_000666759.1 shikimate dehydrogenase -
  CFC57_RS08215 (CFC57_08575) yqeH 1652241..1653341 (-) 1101 WP_001280140.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25791.47 Da        Isoelectric Point: 9.6753

>NTDB_id=295890 CFC57_RS08180 WP_078064170.1 1648182..1648868(-) (comEA) [Staphylococcus aureus strain Smith]
MVLLYQFLLRYKDFLTQWKLYIISTVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=295890 CFC57_RS08180 WP_078064170.1 1648182..1648868(-) (comEA) [Staphylococcus aureus strain Smith]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTACTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGAAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

98.238

99.561

0.978

Multiple sequence alignment