Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CFC57_RS03195 Genome accession   NZ_CP029751
Coordinates   604893..605462 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Smith     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 599893..610462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFC57_RS03170 (CFC57_03300) cysE 601106..601753 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  CFC57_RS03175 (CFC57_03305) cysS 601737..603137 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  CFC57_RS03180 (CFC57_03310) - 603130..603534 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  CFC57_RS03185 (CFC57_03315) rlmB 603542..604288 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CFC57_RS03190 (CFC57_03320) - 604288..604812 (+) 525 WP_000664738.1 NYN domain-containing protein -
  CFC57_RS03195 (CFC57_03325) sigH 604893..605462 (+) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  CFC57_RS03200 (CFC57_03330) rpmG 605577..605720 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  CFC57_RS03205 (CFC57_03335) secE 605776..605958 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  CFC57_RS03210 (CFC57_03340) nusG 605971..606519 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  CFC57_RS03215 (CFC57_03345) rplK 606700..607122 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  CFC57_RS03220 (CFC57_03350) rplA 607330..608022 (+) 693 WP_001074623.1 50S ribosomal protein L1 -
  CFC57_RS03225 (CFC57_03360) rplJ 608294..608794 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  CFC57_RS03230 (CFC57_03365) rplL 608838..609206 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  CFC57_RS03235 (CFC57_03370) - 609381..609989 (+) 609 WP_000020307.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=295873 CFC57_RS03195 WP_000872876.1 604893..605462(+) (sigH) [Staphylococcus aureus strain Smith]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=295873 CFC57_RS03195 WP_000872876.1 604893..605462(+) (sigH) [Staphylococcus aureus strain Smith]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAAAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment