Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LF82_RS13430 Genome accession   NC_011993
Coordinates   2716290..2717027 (+) Length   245 a.a.
NCBI ID   WP_000197693.1    Uniprot ID   -
Organism   Escherichia coli LF82     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2711290..2722027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LF82_RS13415 (LF82_0318) clpC 2711744..2714317 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  LF82_RS13420 (LF82_3114) yfiH 2714447..2715178 (-) 732 WP_000040160.1 purine nucleoside phosphorylase YfiH -
  LF82_RS13425 (LF82_1900) rluD 2715175..2716155 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LF82_RS13430 (LF82_3118) comL 2716290..2717027 (+) 738 WP_000197693.1 outer membrane protein assembly factor BamD Machinery gene
  LF82_RS13440 (LF82_1808) raiA 2717298..2717639 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  LF82_RS25800 pheL 2717743..2717790 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  LF82_RS13445 (LF82_1636) pheA 2717889..2719049 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  LF82_RS13450 (LF82_2338) tyrA 2719092..2720213 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  LF82_RS13455 (LF82_0145) aroF 2720224..2721294 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  LF82_RS13460 (LF82_3115) yfiL 2721504..2721869 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27857.45 Da        Isoelectric Point: 6.4874

>NTDB_id=29578 LF82_RS13430 WP_000197693.1 2716290..2717027(+) (comL) [Escherichia coli LF82]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAVIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=29578 LF82_RS13430 WP_000197693.1 2716290..2717027(+) (comL) [Escherichia coli LF82]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGTCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371

Multiple sequence alignment