Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH37_RS02615 Genome accession   NZ_CP035243
Coordinates   511721..512770 (+) Length   349 a.a.
NCBI ID   WP_054407074.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901946     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 506721..517770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH37_RS02590 (EQH37_02750) - 508082..508429 (+) 348 WP_054407072.1 hypothetical protein -
  EQH37_RS02595 (EQH37_02755) dnaJ 508702..509838 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  EQH37_RS02600 (EQH37_02760) - 510218..510505 (-) 288 WP_000777753.1 hypothetical protein -
  EQH37_RS02605 (EQH37_02765) - 510515..510925 (-) 411 WP_001278301.1 HIT family protein -
  EQH37_RS02610 (EQH37_02770) pptA 510993..511724 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  EQH37_RS02615 (EQH37_02775) pptB 511721..512770 (+) 1050 WP_054407074.1 ABC transporter permease Regulator
  EQH37_RS02620 (EQH37_02780) - 512938..513267 (-) 330 WP_047499345.1 hypothetical protein -
  EQH37_RS02625 (EQH37_02785) - 513544..513882 (+) 339 WP_000682137.1 LytTR family DNA-binding domain-containing protein -
  EQH37_RS02630 (EQH37_02790) comE/blpR 513887..514624 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  EQH37_RS02635 (EQH37_02795) - 514638..515978 (+) 1341 WP_001099892.1 sensor histidine kinase -
  EQH37_RS02640 (EQH37_02800) blpC 516022..516177 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -
  EQH37_RS02645 (EQH37_02805) - 516234..517595 (-) 1362 WP_054407076.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40560.69 Da        Isoelectric Point: 10.0008

>NTDB_id=295728 EQH37_RS02615 WP_054407074.1 511721..512770(+) (pptB) [Streptococcus pneumoniae strain TVO_1901946]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLVMGYGLPVFLVYVLLLGVGKYFLFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=295728 EQH37_RS02615 WP_054407074.1 511721..512770(+) (pptB) [Streptococcus pneumoniae strain TVO_1901946]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTACTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTCCAGACCCTCTTCTTGCTTTTATTTGCGCCCTTGTTTTTAGTCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTTCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAACGTCGTGCCTATCTGGACTTTATTTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTATTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGCTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467


Multiple sequence alignment