Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EQH38_RS04115 Genome accession   NZ_CP035242
Coordinates   754442..755038 (+) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749442..760038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS04095 (EQH38_04330) - 749488..750405 (+) 918 WP_001281506.1 dihydrodipicolinate synthase family protein -
  EQH38_RS04100 (EQH38_04335) - 750423..751307 (+) 885 WP_000222983.1 ROK family protein -
  EQH38_RS04105 (EQH38_04340) - 751323..752174 (-) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  EQH38_RS04110 (EQH38_04345) pbp2b 752374..754431 (+) 2058 WP_001829432.1 penicillin-binding protein 2B -
  EQH38_RS04115 (EQH38_04350) recR 754442..755038 (+) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  EQH38_RS04120 (EQH38_04355) - 755214..756257 (+) 1044 WP_000814647.1 D-alanine--D-alanine ligase -
  EQH38_RS04125 (EQH38_04360) murF 756341..757714 (+) 1374 WP_000778683.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  EQH38_RS04130 (EQH38_04365) - 757809..758513 (+) 705 WP_001055246.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=295632 EQH38_RS04115 WP_000966743.1 754442..755038(+) (recR) [Streptococcus pneumoniae strain TVO_1901947]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=295632 EQH38_RS04115 WP_000966743.1 754442..755038(+) (recR) [Streptococcus pneumoniae strain TVO_1901947]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
GCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485