Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EQH38_RS00450 Genome accession   NZ_CP035242
Coordinates   74086..74856 (+) Length   256 a.a.
NCBI ID   WP_000616159.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 69086..79856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS00435 (EQH38_00450) - 71141..71578 (+) 438 WP_054366136.1 CoA-binding protein -
  EQH38_RS00440 (EQH38_00455) - 71761..72771 (-) 1011 WP_000009157.1 YeiH family protein -
  EQH38_RS00445 (EQH38_00460) - 72920..74089 (+) 1170 WP_000366343.1 pyridoxal phosphate-dependent aminotransferase -
  EQH38_RS00450 (EQH38_00465) recO 74086..74856 (+) 771 WP_000616159.1 DNA repair protein RecO Machinery gene
  EQH38_RS00455 (EQH38_00470) plsX 74853..75845 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  EQH38_RS00460 (EQH38_00475) - 75851..76084 (+) 234 WP_000136447.1 acyl carrier protein -
  EQH38_RS00465 (EQH38_00480) - 76121..76420 (+) 300 Protein_89 transposase family protein -
  EQH38_RS00470 (EQH38_00485) blpU 76623..76853 (+) 231 WP_001093076.1 bacteriocin-like peptide BlpU -
  EQH38_RS10755 - 76856..76981 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  EQH38_RS00475 (EQH38_00490) - 77392..77586 (+) 195 WP_000756776.1 hypothetical protein -
  EQH38_RS00480 (EQH38_00495) comR 77607..78500 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  EQH38_RS00485 (EQH38_00500) - 79030..79326 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29764.33 Da        Isoelectric Point: 5.6115

>NTDB_id=295590 EQH38_RS00450 WP_000616159.1 74086..74856(+) (recO) [Streptococcus pneumoniae strain TVO_1901947]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMETGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=295590 EQH38_RS00450 WP_000616159.1 74086..74856(+) (recO) [Streptococcus pneumoniae strain TVO_1901947]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAACAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.438

100

0.984

Multiple sequence alignment