Detailed information NTG0295579

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: EQH39_RS10125
• Genome accession: NZ_CP035241
• Coordinates: 1985401..1986498 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266666.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain TVO_1901948
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1980401..1991498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQH39_RS10100 (EQH39_10615)	pgsA	1980922..1981467 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
EQH39_RS10105 (EQH39_10620)	rodZ	1981478..1982299 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
EQH39_RS10110 (EQH39_10625)	yfmH	1982341..1983624 (-)	1284	WP_000170183.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
EQH39_RS10115 (EQH39_10630)	yfmF	1983621..1984871 (-)	1251	Protein_1972	EF-P 5-aminopentanol modification-associated protein YfmF	-
EQH39_RS10120 (EQH39_10635)	yaaA	1985030..1985398 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
EQH39_RS10125 (EQH39_10640)	recF	1985401..1986498 (+)	1098	WP_000266666.1	DNA replication/repair protein RecF	Machinery gene
EQH39_RS10130 (EQH39_10645)	guaB	1986549..1988027 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
EQH39_RS10135 (EQH39_10650)	trpS	1988179..1989204 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
EQH39_RS10140 (EQH39_10655)	-	1989410..1991032 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41915.99 Da
• Isoelectric Point: 8.6711

>NTDB_id=295579 EQH39_RS10125 WP_000266666.1 1985401..1986498(+) (recF) [Streptococcus pneumoniae strain TVO_1901948]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSKSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=295579 EQH39_RS10125 WP_000266666.1 1985401..1986498(+) (recF) [Streptococcus pneumoniae strain TVO_1901948]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAAATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	99.178	100	0.992
recF	Bacillus subtilis subsp. subtilis str. 168	45.628	100	0.458