Detailed information NTG0295556

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DCS61_RS19970
• Genome accession: NZ_CP029707
• Coordinates: 4139640..4140512 (+)
• Length: 290 a.a.
• NCBI ID: WP_003161765.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain K34-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4134640..4145512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DCS61_RS19955 (DCS61_19955)	-	4136020..4136487 (-)	468	WP_003161762.1	pilin	-
DCS61_RS19960 (DCS61_19960)	pilB	4136718..4138418 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DCS61_RS19965 (DCS61_19965)	pilC	4138422..4139639 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
DCS61_RS19970 (DCS61_19970)	pilD	4139640..4140512 (+)	873	WP_003161765.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
DCS61_RS19975 (DCS61_19975)	coaE	4140509..4141120 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
DCS61_RS19980 (DCS61_19980)	yacG	4141117..4141317 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
DCS61_RS19985 (DCS61_19985)	-	4141354..4141563 (-)	210	WP_020750398.1	hypothetical protein	-
DCS61_RS19990 (DCS61_19990)	-	4141669..4142358 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
DCS61_RS19995 (DCS61_19995)	-	4142355..4142825 (-)	471	WP_003094664.1	hypothetical protein	-
DCS61_RS20000 (DCS61_20000)	-	4142822..4143247 (-)	426	WP_003161766.1	GNAT family N-acetyltransferase	-
DCS61_RS20005 (DCS61_20005)	-	4143380..4144009 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
DCS61_RS20010 (DCS61_20010)	-	4144006..4144455 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
DCS61_RS20015 (DCS61_20015)	-	4144481..4144651 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=295556 DCS61_RS19970 WP_003161765.1 4139640..4140512(+) (pilD) [Pseudomonas aeruginosa strain K34-7]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=295556 DCS61_RS19970 WP_003161765.1 4139640..4140512(+) (pilD) [Pseudomonas aeruginosa strain K34-7]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469