Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   EQH39_RS02235 Genome accession   NZ_CP035241
Coordinates   450708..451757 (+) Length   349 a.a.
NCBI ID   WP_000653766.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901948     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 445708..456757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH39_RS02205 (EQH39_02320) - 446588..446944 (+) 357 WP_000114422.1 hypothetical protein -
  EQH39_RS02210 (EQH39_02325) dnaJ 447346..448482 (+) 1137 WP_001066301.1 molecular chaperone DnaJ -
  EQH39_RS02215 - 448804..449043 (-) 240 WP_001812223.1 hypothetical protein -
  EQH39_RS02220 (EQH39_02335) - 449205..449492 (-) 288 WP_000777760.1 hypothetical protein -
  EQH39_RS02225 (EQH39_02340) - 449502..449912 (-) 411 WP_001278301.1 HIT family protein -
  EQH39_RS02230 (EQH39_02345) pptA 449980..450711 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  EQH39_RS02235 (EQH39_02350) pptB 450708..451757 (+) 1050 WP_000653766.1 ABC transporter permease Regulator
  EQH39_RS02240 (EQH39_02360) - 451925..452254 (-) 330 WP_000132572.1 hypothetical protein -
  EQH39_RS02245 (EQH39_02365) - 452530..452868 (+) 339 WP_000876670.1 LytTR family DNA-binding domain-containing protein -
  EQH39_RS02250 (EQH39_02370) comE/blpR 452873..453610 (+) 738 WP_001219123.1 response regulator transcription factor Regulator
  EQH39_RS02255 (EQH39_02375) - 453624..454964 (+) 1341 WP_001028654.1 sensor histidine kinase -
  EQH39_RS02260 (EQH39_02380) blpC 455009..455164 (-) 156 WP_000358810.1 quorum-sensing system pheromone BlpC -
  EQH39_RS02265 (EQH39_02385) - 455221..456582 (-) 1362 WP_001069085.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40517.59 Da        Isoelectric Point: 9.8750

>NTDB_id=295490 EQH39_RS02235 WP_000653766.1 450708..451757(+) (pptB) [Streptococcus pneumoniae strain TVO_1901948]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFCQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=295490 EQH39_RS02235 WP_000653766.1 450708..451757(+) (pptB) [Streptococcus pneumoniae strain TVO_1901948]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTGGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTTGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATTTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47